miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 25572 0.66 0.448905
Target:  5'- uGCGCGUGGaCGGcugcuGCCGUucGCuCACGCc -3'
miRNA:   3'- -UGCGCGCCgGCCau---UGGCG--UG-GUGUG- -5'
11431 3' -60.1 NC_003085.1 + 29165 0.66 0.448905
Target:  5'- gACGuCGCGGuuGGacccgcagUGGCaGCGCCGCGa -3'
miRNA:   3'- -UGC-GCGCCggCC--------AUUGgCGUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 6704 0.66 0.448905
Target:  5'- cCGaCGCGGCgaUGGauGCCGUccACCGCGCc -3'
miRNA:   3'- uGC-GCGCCG--GCCauUGGCG--UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 10702 0.66 0.439348
Target:  5'- uGCGCGCGGCCcgcgaggcacuGGcUGACggcaagcggaCGCuguugcuguccgGCCACACg -3'
miRNA:   3'- -UGCGCGCCGG-----------CC-AUUG----------GCG------------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 23214 0.66 0.439348
Target:  5'- -gGCaGUGGCCGGgcugcuccaGACgGCcGCCGCGCu -3'
miRNA:   3'- ugCG-CGCCGGCCa--------UUGgCG-UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 31779 0.66 0.439348
Target:  5'- aGCGUGCGGuuGGgcgaAGCgGCccgGCCGCucGCg -3'
miRNA:   3'- -UGCGCGCCggCCa---UUGgCG---UGGUG--UG- -5'
11431 3' -60.1 NC_003085.1 + 21334 0.66 0.439348
Target:  5'- -aGCGuCGGCCGcagcAACUGCACCugcuucugGCGCg -3'
miRNA:   3'- ugCGC-GCCGGCca--UUGGCGUGG--------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 2725 0.66 0.429909
Target:  5'- uCGgGCGGCUGGcAGCgCGCGCgaagGCGCu -3'
miRNA:   3'- uGCgCGCCGGCCaUUG-GCGUGg---UGUG- -5'
11431 3' -60.1 NC_003085.1 + 11303 0.66 0.429909
Target:  5'- uGCGcCGCGGCgGGga---GCGCCAcCACc -3'
miRNA:   3'- -UGC-GCGCCGgCCauuggCGUGGU-GUG- -5'
11431 3' -60.1 NC_003085.1 + 48373 0.66 0.428971
Target:  5'- cACGCGCGcuccugaGCgCGGcgAGCaGCGCCGCAUu -3'
miRNA:   3'- -UGCGCGC-------CG-GCCa-UUGgCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 26218 0.66 0.428971
Target:  5'- cGCGgGCGGCgCGGUGcgaagcgcggcgGCCGUcuggagcagcccgGCCACu- -3'
miRNA:   3'- -UGCgCGCCG-GCCAU------------UGGCG-------------UGGUGug -5'
11431 3' -60.1 NC_003085.1 + 25030 0.66 0.428971
Target:  5'- aGCGCGCGGuuGau-GCCGCcguagguGCC-CACc -3'
miRNA:   3'- -UGCGCGCCggCcauUGGCG-------UGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 26674 0.66 0.42059
Target:  5'- gGCGggaGCGGCCGuu-GCCGCuGCCGuCGCc -3'
miRNA:   3'- -UGCg--CGCCGGCcauUGGCG-UGGU-GUG- -5'
11431 3' -60.1 NC_003085.1 + 15112 0.66 0.42059
Target:  5'- gACGaGCGGauGGagcGCCGCGCCGCGu -3'
miRNA:   3'- -UGCgCGCCggCCau-UGGCGUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 32998 0.66 0.419664
Target:  5'- gGCGCGCaGGUCGGacacuGCCGuCGCCucgaaugacgucgGCGCc -3'
miRNA:   3'- -UGCGCG-CCGGCCau---UGGC-GUGG-------------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 48872 0.66 0.415057
Target:  5'- gGCGCcagucgagacacccuGCGGCgGG-GGCCGCcCUGCACu -3'
miRNA:   3'- -UGCG---------------CGCCGgCCaUUGGCGuGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 9810 0.66 0.411394
Target:  5'- cGCGCGCGccGCuCGGUGucgucgcgaaGuuGCGCCACu- -3'
miRNA:   3'- -UGCGCGC--CG-GCCAU----------UggCGUGGUGug -5'
11431 3' -60.1 NC_003085.1 + 26114 0.66 0.411394
Target:  5'- uGCGCcucgGCGGCCGG---CgGCGCUugGCc -3'
miRNA:   3'- -UGCG----CGCCGGCCauuGgCGUGGugUG- -5'
11431 3' -60.1 NC_003085.1 + 1182 0.66 0.411394
Target:  5'- uACGaCGCuGCCGGggcgaccauUGACCaaccucaccccgGCGCCGCGCu -3'
miRNA:   3'- -UGC-GCGcCGGCC---------AUUGG------------CGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 31831 0.66 0.411394
Target:  5'- aGCGCGCaGCgaaGGUugaAGCaCGCGCCuCGCa -3'
miRNA:   3'- -UGCGCGcCGg--CCA---UUG-GCGUGGuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.