miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 16338 0.66 0.278365
Target:  5'- gAGCCuGCgGCGCUagGGAGCGUucgacaGCGCCa -3'
miRNA:   3'- -UCGGcUG-UGCGGg-CCUCGCGc-----CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 31551 0.66 0.278365
Target:  5'- gGGCuCGACAUGCCaccuccagaugUGGAGUG-GGaUGCCu -3'
miRNA:   3'- -UCG-GCUGUGCGG-----------GCCUCGCgCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 641 0.66 0.278365
Target:  5'- cGCCaAgGCGCUCGGcGCGaaagaGGUGCUg -3'
miRNA:   3'- uCGGcUgUGCGGGCCuCGCg----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 5518 0.66 0.277702
Target:  5'- cGUCGGCACGUgcucgcaCUGGuGCGCGaaguGCGCg -3'
miRNA:   3'- uCGGCUGUGCG-------GGCCuCGCGC----CGCGg -5'
11432 3' -64.9 NC_003085.1 + 48362 0.66 0.277702
Target:  5'- -uCCGagugacucacGCGCGCuCCuGAGCGCGGCgagcagcGCCg -3'
miRNA:   3'- ucGGC----------UGUGCG-GGcCUCGCGCCG-------CGG- -5'
11432 3' -64.9 NC_003085.1 + 28185 0.66 0.274408
Target:  5'- uGCaGGCGCGCUaucgcuacgacuucgCGGAGU-UGGCGCCa -3'
miRNA:   3'- uCGgCUGUGCGG---------------GCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 9170 0.66 0.271796
Target:  5'- aGGgCGACGCuGCCCaG-GC-CGGCGCa -3'
miRNA:   3'- -UCgGCUGUG-CGGGcCuCGcGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 10654 0.66 0.271796
Target:  5'- uGCUcACACGCCUGGcugAGCGaCaGCGCa -3'
miRNA:   3'- uCGGcUGUGCGGGCC---UCGC-GcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 15109 0.66 0.271796
Target:  5'- -cUCGACGaGCggaUGGAGCGCcGCGCCg -3'
miRNA:   3'- ucGGCUGUgCGg--GCCUCGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 21498 0.66 0.271796
Target:  5'- uGGUgGACugGuuCCCcuuGGAGCccgucgucGCGGCGCUg -3'
miRNA:   3'- -UCGgCUGugC--GGG---CCUCG--------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 6671 0.66 0.271796
Target:  5'- cGUgGACGCcucccugaugGCCCuGGAGCggcuuGCGGcCGCCc -3'
miRNA:   3'- uCGgCUGUG----------CGGG-CCUCG-----CGCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 39258 0.66 0.271146
Target:  5'- gGGCCGcagcaugugcuGCGCGCCuccucuaCGGcGCuGCGGUGUCu -3'
miRNA:   3'- -UCGGC-----------UGUGCGG-------GCCuCG-CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19687 0.66 0.265352
Target:  5'- -cCUGGCG-GCCCuGGAggcGCGCGGCGgCa -3'
miRNA:   3'- ucGGCUGUgCGGG-CCU---CGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 11036 0.66 0.265352
Target:  5'- cGCCGAgaCAgGCCCGGAcuuGUGaCGG-GCUa -3'
miRNA:   3'- uCGGCU--GUgCGGGCCU---CGC-GCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 45909 0.66 0.265352
Target:  5'- cGcCCGGC-CGCCUuGAGCGUGGU-CCa -3'
miRNA:   3'- uC-GGCUGuGCGGGcCUCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 16531 0.66 0.265352
Target:  5'- -aCCGACACccuuuGCCCGaagugcagcGAcuccaacuGCGUGGCGCCc -3'
miRNA:   3'- ucGGCUGUG-----CGGGC---------CU--------CGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 39664 0.66 0.265352
Target:  5'- gAG-CGGCGCGCgCGuGAGCaGCagcaGGCGCUg -3'
miRNA:   3'- -UCgGCUGUGCGgGC-CUCG-CG----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3933 0.66 0.265352
Target:  5'- aAGCCGA-GCGCCgCGGcgauguuGuCGCGGC-CCg -3'
miRNA:   3'- -UCGGCUgUGCGG-GCCu------C-GCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 3230 0.66 0.265352
Target:  5'- uGCCGGCGCuaCCuGGGC-CGGC-CCa -3'
miRNA:   3'- uCGGCUGUGcgGGcCUCGcGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 12598 0.66 0.265352
Target:  5'- uGGuCCGACugACGCgCGuGGCGCcccgGGCGCUg -3'
miRNA:   3'- -UC-GGCUG--UGCGgGCcUCGCG----CCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.