Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11433 | 3' | -62.6 | NC_003085.1 | + | 24417 | 0.66 | 0.352283 |
Target: 5'- cGCgCCGaacaCCGGGUccuucgcgCGGGUgauggugcccAGCGGCGCCu -3' miRNA: 3'- -CGgGGC----GGCCCA--------GCUCG----------UCGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 38983 | 0.66 | 0.352283 |
Target: 5'- cGCCgCGCagcaGGUCGGcCAGCcgaggGGCGCCa -3' miRNA: 3'- -CGGgGCGgc--CCAGCUcGUCG-----UCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 43466 | 0.66 | 0.352283 |
Target: 5'- cGCCCaGCCGuaGG-CGAGCcaacuGGCaAGCAUCg -3' miRNA: 3'- -CGGGgCGGC--CCaGCUCG-----UCG-UCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 43349 | 0.66 | 0.352283 |
Target: 5'- uCCCCGCCcuucgcGGcGUCGuaGGCGGCAaGCAg- -3' miRNA: 3'- cGGGGCGG------CC-CAGC--UCGUCGU-CGUgg -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 23126 | 0.66 | 0.352283 |
Target: 5'- aUCCCGUCuGGUCGAcgaaGCgguuguagucgGGCGGCAUCu -3' miRNA: 3'- cGGGGCGGcCCAGCU----CG-----------UCGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 18758 | 0.66 | 0.347471 |
Target: 5'- aGCCgCCGCUGGaG-CGGGCgauggacaaagcgaaGGCGGCugUc -3' miRNA: 3'- -CGG-GGCGGCC-CaGCUCG---------------UCGUCGugG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 11808 | 0.66 | 0.34429 |
Target: 5'- uGCCCCaucGCCGGGUgcccCGAcGCugaGGCGGaggaCACCc -3' miRNA: 3'- -CGGGG---CGGCCCA----GCU-CG---UCGUC----GUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 42870 | 0.66 | 0.34429 |
Target: 5'- gGCCCgGCCGGGggCGuGUcgaGGguGagGCCg -3' miRNA: 3'- -CGGGgCGGCCCa-GCuCG---UCguCg-UGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 37130 | 0.66 | 0.34429 |
Target: 5'- cGUCaCGCCGGGcacggCGA-CGGCGgGCACCc -3' miRNA: 3'- -CGGgGCGGCCCa----GCUcGUCGU-CGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 12305 | 0.66 | 0.336429 |
Target: 5'- uGgUCCGCUGGGUUGcGGC-GCA-CACCg -3' miRNA: 3'- -CgGGGCGGCCCAGC-UCGuCGUcGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 36587 | 0.66 | 0.336429 |
Target: 5'- gGCUCgCgGCCGGGuguaacgccaguUCGAGcCAGUuuGCGCCa -3' miRNA: 3'- -CGGG-G-CGGCCC------------AGCUC-GUCGu-CGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 24219 | 0.66 | 0.33565 |
Target: 5'- -gCCCGCCGcg--GAGCgcaccagGGCGGCGCCg -3' miRNA: 3'- cgGGGCGGCccagCUCG-------UCGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 34289 | 0.66 | 0.33565 |
Target: 5'- gGCUCaGCCGGGcCGucagcgcagagggGGCAGUAGUGCg -3' miRNA: 3'- -CGGGgCGGCCCaGC-------------UCGUCGUCGUGg -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 26134 | 0.66 | 0.328699 |
Target: 5'- cGCUUgGCCGGccaGAGCGGCgucaAGCAUCu -3' miRNA: 3'- -CGGGgCGGCCcagCUCGUCG----UCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 18711 | 0.66 | 0.328699 |
Target: 5'- cGCCCCGCCuGa-CGAGaCGGgAcGCGCCu -3' miRNA: 3'- -CGGGGCGGcCcaGCUC-GUCgU-CGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 10620 | 0.66 | 0.328699 |
Target: 5'- cGCCgUCGCaguGGGaCGAcGCGGCAguGCGCCc -3' miRNA: 3'- -CGG-GGCGg--CCCaGCU-CGUCGU--CGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 41105 | 0.66 | 0.328699 |
Target: 5'- aCCUgGaCUGGGUggaggcccaggcCGAGC-GCGGCACCc -3' miRNA: 3'- cGGGgC-GGCCCA------------GCUCGuCGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 15166 | 0.66 | 0.327934 |
Target: 5'- uGCCCCcucugcgcugacgGCCcGGcUGAGCcGguGCGCCa -3' miRNA: 3'- -CGGGG-------------CGGcCCaGCUCGuCguCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 40969 | 0.66 | 0.321102 |
Target: 5'- gGCCCCGCCaGcGcUCGcaAGCGGCAaGgGCUg -3' miRNA: 3'- -CGGGGCGGcC-C-AGC--UCGUCGU-CgUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 21966 | 0.66 | 0.321102 |
Target: 5'- gGCUCCGuuGGcUC-AGCAGguGC-CCg -3' miRNA: 3'- -CGGGGCggCCcAGcUCGUCguCGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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