miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 24417 0.66 0.352283
Target:  5'- cGCgCCGaacaCCGGGUccuucgcgCGGGUgauggugcccAGCGGCGCCu -3'
miRNA:   3'- -CGgGGC----GGCCCA--------GCUCG----------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 38983 0.66 0.352283
Target:  5'- cGCCgCGCagcaGGUCGGcCAGCcgaggGGCGCCa -3'
miRNA:   3'- -CGGgGCGgc--CCAGCUcGUCG-----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 43466 0.66 0.352283
Target:  5'- cGCCCaGCCGuaGG-CGAGCcaacuGGCaAGCAUCg -3'
miRNA:   3'- -CGGGgCGGC--CCaGCUCG-----UCG-UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 43349 0.66 0.352283
Target:  5'- uCCCCGCCcuucgcGGcGUCGuaGGCGGCAaGCAg- -3'
miRNA:   3'- cGGGGCGG------CC-CAGC--UCGUCGU-CGUgg -5'
11433 3' -62.6 NC_003085.1 + 23126 0.66 0.352283
Target:  5'- aUCCCGUCuGGUCGAcgaaGCgguuguagucgGGCGGCAUCu -3'
miRNA:   3'- cGGGGCGGcCCAGCU----CG-----------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 18758 0.66 0.347471
Target:  5'- aGCCgCCGCUGGaG-CGGGCgauggacaaagcgaaGGCGGCugUc -3'
miRNA:   3'- -CGG-GGCGGCC-CaGCUCG---------------UCGUCGugG- -5'
11433 3' -62.6 NC_003085.1 + 11808 0.66 0.34429
Target:  5'- uGCCCCaucGCCGGGUgcccCGAcGCugaGGCGGaggaCACCc -3'
miRNA:   3'- -CGGGG---CGGCCCA----GCU-CG---UCGUC----GUGG- -5'
11433 3' -62.6 NC_003085.1 + 42870 0.66 0.34429
Target:  5'- gGCCCgGCCGGGggCGuGUcgaGGguGagGCCg -3'
miRNA:   3'- -CGGGgCGGCCCa-GCuCG---UCguCg-UGG- -5'
11433 3' -62.6 NC_003085.1 + 37130 0.66 0.34429
Target:  5'- cGUCaCGCCGGGcacggCGA-CGGCGgGCACCc -3'
miRNA:   3'- -CGGgGCGGCCCa----GCUcGUCGU-CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 12305 0.66 0.336429
Target:  5'- uGgUCCGCUGGGUUGcGGC-GCA-CACCg -3'
miRNA:   3'- -CgGGGCGGCCCAGC-UCGuCGUcGUGG- -5'
11433 3' -62.6 NC_003085.1 + 36587 0.66 0.336429
Target:  5'- gGCUCgCgGCCGGGuguaacgccaguUCGAGcCAGUuuGCGCCa -3'
miRNA:   3'- -CGGG-G-CGGCCC------------AGCUC-GUCGu-CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 24219 0.66 0.33565
Target:  5'- -gCCCGCCGcg--GAGCgcaccagGGCGGCGCCg -3'
miRNA:   3'- cgGGGCGGCccagCUCG-------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 34289 0.66 0.33565
Target:  5'- gGCUCaGCCGGGcCGucagcgcagagggGGCAGUAGUGCg -3'
miRNA:   3'- -CGGGgCGGCCCaGC-------------UCGUCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 26134 0.66 0.328699
Target:  5'- cGCUUgGCCGGccaGAGCGGCgucaAGCAUCu -3'
miRNA:   3'- -CGGGgCGGCCcagCUCGUCG----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 18711 0.66 0.328699
Target:  5'- cGCCCCGCCuGa-CGAGaCGGgAcGCGCCu -3'
miRNA:   3'- -CGGGGCGGcCcaGCUC-GUCgU-CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 10620 0.66 0.328699
Target:  5'- cGCCgUCGCaguGGGaCGAcGCGGCAguGCGCCc -3'
miRNA:   3'- -CGG-GGCGg--CCCaGCU-CGUCGU--CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 41105 0.66 0.328699
Target:  5'- aCCUgGaCUGGGUggaggcccaggcCGAGC-GCGGCACCc -3'
miRNA:   3'- cGGGgC-GGCCCA------------GCUCGuCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 15166 0.66 0.327934
Target:  5'- uGCCCCcucugcgcugacgGCCcGGcUGAGCcGguGCGCCa -3'
miRNA:   3'- -CGGGG-------------CGGcCCaGCUCGuCguCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 40969 0.66 0.321102
Target:  5'- gGCCCCGCCaGcGcUCGcaAGCGGCAaGgGCUg -3'
miRNA:   3'- -CGGGGCGGcC-C-AGC--UCGUCGU-CgUGG- -5'
11433 3' -62.6 NC_003085.1 + 21966 0.66 0.321102
Target:  5'- gGCUCCGuuGGcUC-AGCAGguGC-CCg -3'
miRNA:   3'- -CGGGGCggCCcAGcUCGUCguCGuGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.