Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11433 | 3' | -62.6 | NC_003085.1 | + | 20943 | 0.67 | 0.278288 |
Target: 5'- aGCCCCGCgCGcGUcugcaCGAGguGCGGUggcugGCCu -3' miRNA: 3'- -CGGGGCG-GCcCA-----GCUCguCGUCG-----UGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 34294 | 0.71 | 0.155287 |
Target: 5'- uGUUCCGCCGaGcGUCGcgGGCAG-GGCACCg -3' miRNA: 3'- -CGGGGCGGC-C-CAGC--UCGUCgUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 24855 | 0.72 | 0.132474 |
Target: 5'- uUCUCGCCuGGGcCGGcaaccucaccuGCAGCGGCGCCc -3' miRNA: 3'- cGGGGCGG-CCCaGCU-----------CGUCGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 23864 | 0.72 | 0.128642 |
Target: 5'- aGCCCCcauucgcGUCGGGgcgUGAGCgaacGGCAGCAgCCg -3' miRNA: 3'- -CGGGG-------CGGCCCa--GCUCG----UCGUCGU-GG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 22771 | 0.73 | 0.112786 |
Target: 5'- -gCCCGCCGcGGUgGcgacGGCAGCGGCaacgGCCg -3' miRNA: 3'- cgGGGCGGC-CCAgC----UCGUCGUCG----UGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 38142 | 0.73 | 0.109783 |
Target: 5'- cGCCCUGCUGGcGUUG-GUGGUGGCGCUc -3' miRNA: 3'- -CGGGGCGGCC-CAGCuCGUCGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 23798 | 0.74 | 0.098505 |
Target: 5'- cGUCCgGCCGGuaGUCGcAGUccGCAGCACCg -3' miRNA: 3'- -CGGGgCGGCC--CAGC-UCGu-CGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 12782 | 0.76 | 0.061736 |
Target: 5'- uGCCCCuGCCGccguuGUCGGGCAGguGCuCCa -3' miRNA: 3'- -CGGGG-CGGCc----CAGCUCGUCguCGuGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 48593 | 0.77 | 0.056799 |
Target: 5'- cGCCaCCGCCGGGaaggcgCGAGCGauGCgcuuGGCGCCg -3' miRNA: 3'- -CGG-GGCGGCCCa-----GCUCGU--CG----UCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 42683 | 0.7 | 0.1788 |
Target: 5'- gGCCCgGUacucgucaagugucuCaGGcUUGAGCGGCGGCACCu -3' miRNA: 3'- -CGGGgCG---------------GcCC-AGCUCGUCGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 42817 | 0.69 | 0.196186 |
Target: 5'- uGUCuuGCaCGGGUCcGGCgcuGGCGGCGCg -3' miRNA: 3'- -CGGggCG-GCCCAGcUCG---UCGUCGUGg -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 10093 | 0.67 | 0.277614 |
Target: 5'- cCCCCGCCGGcgucggaaccgccGUUGAuggaccugcucGCAGCGGacUACCg -3' miRNA: 3'- cGGGGCGGCC-------------CAGCU-----------CGUCGUC--GUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 3879 | 0.67 | 0.27161 |
Target: 5'- cGCgCCCGCCGucuGUC--GCGGUGGCACUg -3' miRNA: 3'- -CG-GGGCGGCc--CAGcuCGUCGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 44273 | 0.67 | 0.27161 |
Target: 5'- cGgCCUGCCuGGcuuguuccucccGUCGAGCAGCAauCGCCg -3' miRNA: 3'- -CgGGGCGG-CC------------CAGCUCGUCGUc-GUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 6066 | 0.68 | 0.258643 |
Target: 5'- aGCCCCaCCGGGaUGcacCAGCGGCcCCa -3' miRNA: 3'- -CGGGGcGGCCCaGCuc-GUCGUCGuGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 26886 | 0.68 | 0.254853 |
Target: 5'- gGCgCCGgUGGGUgGAcucaacaccgucucgGCgGGCAGCGCCa -3' miRNA: 3'- -CGgGGCgGCCCAgCU---------------CG-UCGUCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 42008 | 0.68 | 0.246187 |
Target: 5'- uGCCCCGgCGGcGUCG-GCacGGacgagGGCGCCu -3' miRNA: 3'- -CGGGGCgGCC-CAGCuCG--UCg----UCGUGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 29021 | 0.69 | 0.223329 |
Target: 5'- cGgCCCGCUGGGggaugccuccaacgcCGuccAGCAGCAGUugGCCa -3' miRNA: 3'- -CgGGGCGGCCCa--------------GC---UCGUCGUCG--UGG- -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 2270 | 0.69 | 0.217216 |
Target: 5'- gGCCUCGUCGcGGacuucuucgCGGGCuccGGCAGCACg -3' miRNA: 3'- -CGGGGCGGC-CCa--------GCUCG---UCGUCGUGg -5' |
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11433 | 3' | -62.6 | NC_003085.1 | + | 37061 | 1.11 | 0.000124 |
Target: 5'- gGCCCCGCCGGGUCGAGCAGCAGCACCc -3' miRNA: 3'- -CGGGGCGGCCCAGCUCGUCGUCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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