miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 25726 0.66 0.764132
Target:  5'- aCGUGUccuuCGGCGccACGgugGggGCCGggGCc -3'
miRNA:   3'- -GUACGc---GCCGC--UGUa--CaaCGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 26721 0.66 0.764132
Target:  5'- --aGgGCGGUGACGgcgcGgcGCCGguGCu -3'
miRNA:   3'- guaCgCGCCGCUGUa---CaaCGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 6289 0.66 0.761006
Target:  5'- --cGCGCGGCGguggagcgacuggaGCAg---GCCG-AGCg -3'
miRNA:   3'- guaCGCGCCGC--------------UGUacaaCGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 34929 0.66 0.753664
Target:  5'- gGUGCaggcgcacGCGGCGGa--GUUGCUGGccGGCg -3'
miRNA:   3'- gUACG--------CGCCGCUguaCAACGGCU--UCG- -5'
11438 5' -54 NC_003085.1 + 44318 0.66 0.753664
Target:  5'- --gGUGuuGCGACAUGgaUGCCuGGGCg -3'
miRNA:   3'- guaCGCgcCGCUGUACa-ACGGcUUCG- -5'
11438 5' -54 NC_003085.1 + 14666 0.66 0.753664
Target:  5'- --aGCGCGGCaagGACuUGgaggcGCCGuGGCg -3'
miRNA:   3'- guaCGCGCCG---CUGuACaa---CGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 48486 0.66 0.753664
Target:  5'- -uUGgGacaCGGCGGCGUGUccUGCCccGGCa -3'
miRNA:   3'- guACgC---GCCGCUGUACA--ACGGcuUCG- -5'
11438 5' -54 NC_003085.1 + 23590 0.66 0.753664
Target:  5'- uCcgGCaCGGCGGCGaGUUGCuCGAcGGUg -3'
miRNA:   3'- -GuaCGcGCCGCUGUaCAACG-GCU-UCG- -5'
11438 5' -54 NC_003085.1 + 11098 0.66 0.753664
Target:  5'- gAUGuCGcCGGCGGCAUucgUGCCcagGAAGUu -3'
miRNA:   3'- gUAC-GC-GCCGCUGUAca-ACGG---CUUCG- -5'
11438 5' -54 NC_003085.1 + 24549 0.66 0.75261
Target:  5'- gCGUGCGCGGCG-CGgacaUGCCuGAccucaucaugucuGGCa -3'
miRNA:   3'- -GUACGCGCCGCuGUaca-ACGG-CU-------------UCG- -5'
11438 5' -54 NC_003085.1 + 42714 0.66 0.743068
Target:  5'- --aGCgGCGGCaccucaGGCGUGggcGUCGggGCg -3'
miRNA:   3'- guaCG-CGCCG------CUGUACaa-CGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 19279 0.66 0.743068
Target:  5'- --aGCGCu-CGACAg---GCCGGAGCa -3'
miRNA:   3'- guaCGCGccGCUGUacaaCGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 42872 0.66 0.743068
Target:  5'- cCcgGC-CGGgGGCGUGUcgagggugagGCCGAGGUc -3'
miRNA:   3'- -GuaCGcGCCgCUGUACAa---------CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 21558 0.66 0.742001
Target:  5'- --cGCGCGGCccgcgagggccauGACGaGUUGCuCGGugGGCu -3'
miRNA:   3'- guaCGCGCCG-------------CUGUaCAACG-GCU--UCG- -5'
11438 5' -54 NC_003085.1 + 34192 0.66 0.732354
Target:  5'- --gGCGCGGCGG-GUGagcucgGCCGcGGCc -3'
miRNA:   3'- guaCGCGCCGCUgUACaa----CGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 9444 0.66 0.732354
Target:  5'- aCGUGC-CGGCGcuCAUGgacgaGCuCGAGGCc -3'
miRNA:   3'- -GUACGcGCCGCu-GUACaa---CG-GCUUCG- -5'
11438 5' -54 NC_003085.1 + 4500 0.66 0.721536
Target:  5'- --cGCGCuGGCGACugg--GCCaacGAGGCg -3'
miRNA:   3'- guaCGCG-CCGCUGuacaaCGG---CUUCG- -5'
11438 5' -54 NC_003085.1 + 40311 0.66 0.721536
Target:  5'- -cUGCGCGGCGGCGaGcuccGCC-AGGUg -3'
miRNA:   3'- guACGCGCCGCUGUaCaa--CGGcUUCG- -5'
11438 5' -54 NC_003085.1 + 20090 0.67 0.710625
Target:  5'- --cGCGCuGUGACGUGccgcaggUGgCGggGCu -3'
miRNA:   3'- guaCGCGcCGCUGUACa------ACgGCuuCG- -5'
11438 5' -54 NC_003085.1 + 18077 0.67 0.710625
Target:  5'- --cGUGCGGCuGGCcucuuUGcgGCCGggGUc -3'
miRNA:   3'- guaCGCGCCG-CUGu----ACaaCGGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.