miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11439 5' -55 NC_003085.1 + 28829 0.65 0.708929
Target:  5'- cCACGUCaUCGU-CCgCGUCCGCGAAg -3'
miRNA:   3'- cGUGCAG-GGUAuGGaGCGGGCGUUUa -5'
11439 5' -55 NC_003085.1 + 40936 0.66 0.697967
Target:  5'- -gGCGUCaCCGccuucGCCUgCGCCCGCuGGUg -3'
miRNA:   3'- cgUGCAG-GGUa----UGGA-GCGGGCGuUUA- -5'
11439 5' -55 NC_003085.1 + 45795 0.66 0.697967
Target:  5'- cGCGcCGUCCCugccuccaACCUCGCCaccaguGCAGc- -3'
miRNA:   3'- -CGU-GCAGGGua------UGGAGCGGg-----CGUUua -5'
11439 5' -55 NC_003085.1 + 46612 0.66 0.675856
Target:  5'- gGCAUGgcucagCCCu--CCUCGCCCGg---- -3'
miRNA:   3'- -CGUGCa-----GGGuauGGAGCGGGCguuua -5'
11439 5' -55 NC_003085.1 + 35897 0.66 0.66473
Target:  5'- cCACGUCCaCGcgcGCCUUGCUCGCc--- -3'
miRNA:   3'- cGUGCAGG-GUa--UGGAGCGGGCGuuua -5'
11439 5' -55 NC_003085.1 + 43717 0.66 0.663616
Target:  5'- uGCGCucaUCCGUaaucagugcgacgACCUCgGCCCGCGAGUa -3'
miRNA:   3'- -CGUGca-GGGUA-------------UGGAG-CGGGCGUUUA- -5'
11439 5' -55 NC_003085.1 + 21535 0.66 0.65804
Target:  5'- gGCAaGUCCCgGUACCggaaccacgcgcgGCCCGCGAGg -3'
miRNA:   3'- -CGUgCAGGG-UAUGGag-----------CGGGCGUUUa -5'
11439 5' -55 NC_003085.1 + 25277 0.66 0.653573
Target:  5'- gGCGCG-CCCGUcuACCUCa-CCGCGAc- -3'
miRNA:   3'- -CGUGCaGGGUA--UGGAGcgGGCGUUua -5'
11439 5' -55 NC_003085.1 + 43139 0.67 0.642396
Target:  5'- aGCGCG-CCCAUGCUgcgCGguuCCCGCu--- -3'
miRNA:   3'- -CGUGCaGGGUAUGGa--GC---GGGCGuuua -5'
11439 5' -55 NC_003085.1 + 24026 0.67 0.641278
Target:  5'- -aACGUCaccaagaacaacgCCAU-CCUCGCCCGCc--- -3'
miRNA:   3'- cgUGCAG-------------GGUAuGGAGCGGGCGuuua -5'
11439 5' -55 NC_003085.1 + 26025 0.67 0.631209
Target:  5'- -uGCGUCCC-UGCUgCGCCUGCu--- -3'
miRNA:   3'- cgUGCAGGGuAUGGaGCGGGCGuuua -5'
11439 5' -55 NC_003085.1 + 44985 0.67 0.631209
Target:  5'- cGCuuCGUCaCCGUGcCCUCGUcgUCGCGGAUg -3'
miRNA:   3'- -CGu-GCAG-GGUAU-GGAGCG--GGCGUUUA- -5'
11439 5' -55 NC_003085.1 + 39424 0.67 0.620023
Target:  5'- cGCGCG-CUCG-ACCUCGCauggCGCAAAg -3'
miRNA:   3'- -CGUGCaGGGUaUGGAGCGg---GCGUUUa -5'
11439 5' -55 NC_003085.1 + 15150 0.67 0.620023
Target:  5'- aGCugGacgCCUcgGUGCCcUGCCCGCGAc- -3'
miRNA:   3'- -CGugCa--GGG--UAUGGaGCGGGCGUUua -5'
11439 5' -55 NC_003085.1 + 3245 0.67 0.620023
Target:  5'- gGC-CGgCCCAcACaCUCGCCCGCc--- -3'
miRNA:   3'- -CGuGCaGGGUaUG-GAGCGGGCGuuua -5'
11439 5' -55 NC_003085.1 + 34323 0.67 0.608848
Target:  5'- aGUGCGUCUCGUGCUcgUCGCaccaCGCGGc- -3'
miRNA:   3'- -CGUGCAGGGUAUGG--AGCGg---GCGUUua -5'
11439 5' -55 NC_003085.1 + 34605 0.68 0.586569
Target:  5'- aGCACGUCCUgcuucuccGU-CUUCGUCCGCu--- -3'
miRNA:   3'- -CGUGCAGGG--------UAuGGAGCGGGCGuuua -5'
11439 5' -55 NC_003085.1 + 40263 0.68 0.575485
Target:  5'- cUACGUCCCGccccccuacaACCUCGUCUGCGc-- -3'
miRNA:   3'- cGUGCAGGGUa---------UGGAGCGGGCGUuua -5'
11439 5' -55 NC_003085.1 + 6905 0.68 0.553468
Target:  5'- uCGCGUCagc--CCUCGCCCGCGc-- -3'
miRNA:   3'- cGUGCAGgguauGGAGCGGGCGUuua -5'
11439 5' -55 NC_003085.1 + 25116 0.68 0.553468
Target:  5'- gGC-CGUCCCGUcGCCguagaGCgCCGCGGAg -3'
miRNA:   3'- -CGuGCAGGGUA-UGGag---CG-GGCGUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.