miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11447 5' -55.7 NC_003085.1 + 20209 0.66 0.693249
Target:  5'- aUUCGGAcugggcguugcGGUagGCcUCGCUGCCCUCg -3'
miRNA:   3'- aGAGCUU-----------UCGagUGaAGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 38003 0.66 0.693249
Target:  5'- --gUGGGAcGCUCACaccgCGUCGgCCCCa -3'
miRNA:   3'- agaGCUUU-CGAGUGaa--GCGGCgGGGG- -5'
11447 5' -55.7 NC_003085.1 + 40318 0.66 0.682361
Target:  5'- --gCGGcGAGCUcCGCcaggUGCCGCUCCCa -3'
miRNA:   3'- agaGCU-UUCGA-GUGaa--GCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 7328 0.66 0.675804
Target:  5'- --aCGAGAGCauccgcgccgugcauUCGCUU-GCCGUCCuCCg -3'
miRNA:   3'- agaGCUUUCG---------------AGUGAAgCGGCGGG-GG- -5'
11447 5' -55.7 NC_003085.1 + 26328 0.66 0.671424
Target:  5'- gCUCG-AAGCUCugcgccgucuuGCggugcugCGCCGCCUCg -3'
miRNA:   3'- aGAGCuUUCGAG-----------UGaa-----GCGGCGGGGg -5'
11447 5' -55.7 NC_003085.1 + 27795 0.66 0.671424
Target:  5'- --cUGAu-GCUCACccgcgCGUCGCUCCCg -3'
miRNA:   3'- agaGCUuuCGAGUGaa---GCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 45778 0.66 0.671424
Target:  5'- --gCGGcgucAGGaCUCGCcgCGCCGUCCCUg -3'
miRNA:   3'- agaGCU----UUC-GAGUGaaGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 21217 0.66 0.671424
Target:  5'- gCUUGAGAGCUU-CUUC-CCGUgUCCg -3'
miRNA:   3'- aGAGCUUUCGAGuGAAGcGGCGgGGG- -5'
11447 5' -55.7 NC_003085.1 + 37503 0.66 0.660451
Target:  5'- -------cGCUCACa--GCCGCCCCUc -3'
miRNA:   3'- agagcuuuCGAGUGaagCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 20848 0.66 0.660451
Target:  5'- --cCGGcgccGAGCUCGCcgcugcggUGCCGCCCaCCc -3'
miRNA:   3'- agaGCU----UUCGAGUGaa------GCGGCGGG-GG- -5'
11447 5' -55.7 NC_003085.1 + 16901 0.67 0.627413
Target:  5'- --gCGAuGAGC-CACcUCGCaccccaGCCCCCg -3'
miRNA:   3'- agaGCU-UUCGaGUGaAGCGg-----CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 18621 0.67 0.626311
Target:  5'- cUUUCGAgacugcauccuccGAGCg--UUUCGCCguGCCCCCg -3'
miRNA:   3'- -AGAGCU-------------UUCGaguGAAGCGG--CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 935 0.67 0.605392
Target:  5'- aCUgGAAGGCcCGCgcccUCGCCGCCg-- -3'
miRNA:   3'- aGAgCUUUCGaGUGa---AGCGGCGGggg -5'
11447 5' -55.7 NC_003085.1 + 23832 0.67 0.594411
Target:  5'- gUCagCGAGAGCcucggcccacUCGCUUC-CUgaGCCCCCa -3'
miRNA:   3'- -AGa-GCUUUCG----------AGUGAAGcGG--CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 4904 0.67 0.594411
Target:  5'- cCUUGAGAcGCagUCACaUCGCgucCGCCCUCg -3'
miRNA:   3'- aGAGCUUU-CG--AGUGaAGCG---GCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 35947 0.67 0.594411
Target:  5'- gCUUGcGGAGCUUcucgACgUUCGCCGCUgCCa -3'
miRNA:   3'- aGAGC-UUUCGAG----UG-AAGCGGCGGgGG- -5'
11447 5' -55.7 NC_003085.1 + 31963 0.67 0.583462
Target:  5'- cCUCGGcGGGCUgGCga--CUGCCCCCg -3'
miRNA:   3'- aGAGCU-UUCGAgUGaagcGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 41626 0.67 0.583462
Target:  5'- cCUCGAAcauGGCcCagGCUUgGCCGCCgCUCa -3'
miRNA:   3'- aGAGCUU---UCGaG--UGAAgCGGCGG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 30671 0.67 0.583462
Target:  5'- gUCUCGuc-GCUCAgCgacaGCCGCCUUCg -3'
miRNA:   3'- -AGAGCuuuCGAGU-Gaag-CGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 41700 0.68 0.572554
Target:  5'- aUCUgGgcGGCUCGCUcaCGCUucacgGCCUCCa -3'
miRNA:   3'- -AGAgCuuUCGAGUGAa-GCGG-----CGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.