miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11448 5' -55.4 NC_003085.1 + 44965 0.66 0.744837
Target:  5'- cGUUgGCCcagUCGCCAgcgcgcuuCGUCaccgugcccucgUCGUCGCg -3'
miRNA:   3'- cCAGgUGGa--AGCGGU--------GCAG------------AGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 47377 0.66 0.744837
Target:  5'- aGGUgCGgCg--GCUGCG-CUCGUCGCg -3'
miRNA:   3'- -CCAgGUgGaagCGGUGCaGAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 27328 0.66 0.734465
Target:  5'- gGGUCaACCcg-GCCAacauCGUCuUCGUCGCc -3'
miRNA:   3'- -CCAGgUGGaagCGGU----GCAG-AGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 33748 0.66 0.723992
Target:  5'- -aUCCACCg-CGuCCAUGUCguugagcgUGUCGCc -3'
miRNA:   3'- ccAGGUGGaaGC-GGUGCAGa-------GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 38420 0.66 0.71343
Target:  5'- uGGUUCGCguUUUCGgCACca-UCGUCGCg -3'
miRNA:   3'- -CCAGGUG--GAAGCgGUGcagAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 40634 0.66 0.71343
Target:  5'- -cUCCugCUcgcgcaGCCAUGUCUCGgcaGCc -3'
miRNA:   3'- ccAGGugGAag----CGGUGCAGAGCag-CG- -5'
11448 5' -55.4 NC_003085.1 + 30690 0.66 0.70279
Target:  5'- --gCCGCCUUCGCUuuGUC-CaUCGCc -3'
miRNA:   3'- ccaGGUGGAAGCGGugCAGaGcAGCG- -5'
11448 5' -55.4 NC_003085.1 + 35240 0.66 0.70279
Target:  5'- cGGgccCCugCUUCcgcuuGCgCGCGggCUUGUCGCa -3'
miRNA:   3'- -CCa--GGugGAAG-----CG-GUGCa-GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 34248 0.66 0.70279
Target:  5'- aGUCCACC-UCGCCcACuUCcgCGgCGCg -3'
miRNA:   3'- cCAGGUGGaAGCGG-UGcAGa-GCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 30411 0.66 0.692082
Target:  5'- -cUCCGCCgcgCGCCGCGgaaUCUCcacgaCGCa -3'
miRNA:   3'- ccAGGUGGaa-GCGGUGC---AGAGca---GCG- -5'
11448 5' -55.4 NC_003085.1 + 33003 0.67 0.681317
Target:  5'- aGGUCCAUCgacgaUUGCCucCGUCagCGaCGCg -3'
miRNA:   3'- -CCAGGUGGa----AGCGGu-GCAGa-GCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 11116 0.67 0.681317
Target:  5'- -cUCCGCCUUCGUUgggGCG-CgCGUCGUc -3'
miRNA:   3'- ccAGGUGGAAGCGG---UGCaGaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 681 0.67 0.670507
Target:  5'- cGG-CCACCUgUC-CCGCGUCcggccUCGggCGCg -3'
miRNA:   3'- -CCaGGUGGA-AGcGGUGCAG-----AGCa-GCG- -5'
11448 5' -55.4 NC_003085.1 + 23259 0.67 0.670507
Target:  5'- --gCCGCCcgCGCacaagGCGcagCUCGUCGCg -3'
miRNA:   3'- ccaGGUGGaaGCGg----UGCa--GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 47244 0.67 0.670507
Target:  5'- cGGuUCCACgagCGCCACuggcuucuguGUCUCGUUGa -3'
miRNA:   3'- -CC-AGGUGgaaGCGGUG----------CAGAGCAGCg -5'
11448 5' -55.4 NC_003085.1 + 23835 0.67 0.670507
Target:  5'- gGGgcgCCcgGCCUUCGUCGucuccucCUCGUCGCg -3'
miRNA:   3'- -CCa--GG--UGGAAGCGGUgca----GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 24167 0.67 0.670507
Target:  5'- cGUCCACCUg-GCCGg--C-CGUCGCg -3'
miRNA:   3'- cCAGGUGGAagCGGUgcaGaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 20233 0.67 0.659661
Target:  5'- cGGUacgucgCCACCUUCGCCcaggugGCGca--GUCGCu -3'
miRNA:   3'- -CCA------GGUGGAAGCGG------UGCagagCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 41343 0.67 0.653141
Target:  5'- aGGUCCACCacgUcaucagcgcccaacuUCGCgGCGUgaUGUUGCg -3'
miRNA:   3'- -CCAGGUGG---A---------------AGCGgUGCAgaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 41548 0.67 0.648791
Target:  5'- cGUCUGCUgcCGCCGCGgCggcaGUCGCg -3'
miRNA:   3'- cCAGGUGGaaGCGGUGCaGag--CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.