miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11449 5' -55.7 NC_003085.1 + 30306 0.66 0.665427
Target:  5'- -uGAGGACgaccccaugGCCac--CCAGCGGGCc -3'
miRNA:   3'- guCUCCUGaa-------CGGcgauGGUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 41540 0.66 0.654367
Target:  5'- uGGAGuGACgu-CUGCUGCCGcCGcGGCg -3'
miRNA:   3'- gUCUC-CUGaacGGCGAUGGUuGC-CCG- -5'
11449 5' -55.7 NC_003085.1 + 26870 0.66 0.654367
Target:  5'- aGGAGGcgcACcUGCCGgcGCCggUGGGUg -3'
miRNA:   3'- gUCUCC---UGaACGGCgaUGGuuGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 3084 0.66 0.654367
Target:  5'- aCAGcGuGACgaGCCGCagGCCGACGG-Cg -3'
miRNA:   3'- -GUCuC-CUGaaCGGCGa-UGGUUGCCcG- -5'
11449 5' -55.7 NC_003085.1 + 35264 0.66 0.643287
Target:  5'- ---cGGGCUUGUCGCaGCCcgGACGcuGGCa -3'
miRNA:   3'- gucuCCUGAACGGCGaUGG--UUGC--CCG- -5'
11449 5' -55.7 NC_003085.1 + 4835 0.66 0.643287
Target:  5'- -uGGGGugUcagucUGCCGUguUACCuGACaGGGCg -3'
miRNA:   3'- guCUCCugA-----ACGGCG--AUGG-UUG-CCCG- -5'
11449 5' -55.7 NC_003085.1 + 42691 0.66 0.643287
Target:  5'- gCGGaAGGGCUcucGCCGUccGCCAcgGCGcGGCa -3'
miRNA:   3'- -GUC-UCCUGAa--CGGCGa-UGGU--UGC-CCG- -5'
11449 5' -55.7 NC_003085.1 + 41402 0.66 0.643287
Target:  5'- aCGGccGugUUGUCGgaGCCu-CGGGCg -3'
miRNA:   3'- -GUCucCugAACGGCgaUGGuuGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 11437 0.66 0.632195
Target:  5'- aAGGGGAagcggucGCCGUUgggGCCGACGcGGUg -3'
miRNA:   3'- gUCUCCUgaa----CGGCGA---UGGUUGC-CCG- -5'
11449 5' -55.7 NC_003085.1 + 6270 0.66 0.632195
Target:  5'- -cGAGGAC--GCCGCgaagUACCG-CGcGGCg -3'
miRNA:   3'- guCUCCUGaaCGGCG----AUGGUuGC-CCG- -5'
11449 5' -55.7 NC_003085.1 + 27935 0.66 0.632195
Target:  5'- cCGGuaccGGACUUGCCcauCUACUcguccgcgguGugGGGCg -3'
miRNA:   3'- -GUCu---CCUGAACGGc--GAUGG----------UugCCCG- -5'
11449 5' -55.7 NC_003085.1 + 26371 0.66 0.632195
Target:  5'- gCAGcGGA--UGCCGUUGCU--CGGGCc -3'
miRNA:   3'- -GUCuCCUgaACGGCGAUGGuuGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 38816 0.66 0.62554
Target:  5'- -cGAGGACUuuggcUGCCuCUGCCGGCGccccacacagccggaGGUg -3'
miRNA:   3'- guCUCCUGA-----ACGGcGAUGGUUGC---------------CCG- -5'
11449 5' -55.7 NC_003085.1 + 41488 0.66 0.621104
Target:  5'- cCAGAuggcGGACcUGCUGCc-CUGugGGGCa -3'
miRNA:   3'- -GUCU----CCUGaACGGCGauGGUugCCCG- -5'
11449 5' -55.7 NC_003085.1 + 951 0.66 0.621104
Target:  5'- cCGGGugccaGACagGCCGCUGCCG--GGGCa -3'
miRNA:   3'- -GUCUc----CUGaaCGGCGAUGGUugCCCG- -5'
11449 5' -55.7 NC_003085.1 + 45704 0.66 0.621104
Target:  5'- aCGGAGcACUgcguagacGCCGCUcACCAaguccugcGCGGGUg -3'
miRNA:   3'- -GUCUCcUGAa-------CGGCGA-UGGU--------UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 47713 0.67 0.598961
Target:  5'- -cGucGAC-UGCUGCgccUGCUGACGGGCg -3'
miRNA:   3'- guCucCUGaACGGCG---AUGGUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 9166 0.67 0.598961
Target:  5'- gUAGAGGGCga--CGCUGCCcaGGCcGGCg -3'
miRNA:   3'- -GUCUCCUGaacgGCGAUGG--UUGcCCG- -5'
11449 5' -55.7 NC_003085.1 + 35585 0.67 0.598961
Target:  5'- gCAGuAGaGCUUGCgGCuUGCCGggcGCGGGUu -3'
miRNA:   3'- -GUC-UCcUGAACGgCG-AUGGU---UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 4196 0.67 0.576933
Target:  5'- gCAGAcgcaGGAC--GCCGCUgacGCgCGGCGGGUu -3'
miRNA:   3'- -GUCU----CCUGaaCGGCGA---UG-GUUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.