miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11452 5' -59.8 NC_003085.1 + 11336 0.66 0.434057
Target:  5'- --aGCaGGgcGGCgAGCCucACgGCACCUc -3'
miRNA:   3'- caaCG-CCuuCCGgUCGG--UGgCGUGGA- -5'
11452 5' -59.8 NC_003085.1 + 11214 0.66 0.434057
Target:  5'- --cGCGGAAGuaGgUGGCCACCGCcgacgugcuGCCg -3'
miRNA:   3'- caaCGCCUUC--CgGUCGGUGGCG---------UGGa -5'
11452 5' -59.8 NC_003085.1 + 6697 0.66 0.434057
Target:  5'- --aGCGGcuugcGGCC-GCCcugcACCGCACCc -3'
miRNA:   3'- caaCGCCuu---CCGGuCGG----UGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 28694 0.66 0.428344
Target:  5'- --aGCGGAugcGGCaCAGCCcgaagccgggcagcaGCCGguCCUg -3'
miRNA:   3'- caaCGCCUu--CCG-GUCGG---------------UGGCguGGA- -5'
11452 5' -59.8 NC_003085.1 + 1045 0.66 0.428344
Target:  5'- -aUGCGGAGGaaGCCAgcGCCGCCgaggcagacaaugcgGCGCUg -3'
miRNA:   3'- caACGCCUUC--CGGU--CGGUGG---------------CGUGGa -5'
11452 5' -59.8 NC_003085.1 + 6708 0.66 0.424561
Target:  5'- --cGCGGcgauGGauGCCGuCCACCGCGCCc -3'
miRNA:   3'- caaCGCCu---UC--CGGUcGGUGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 22066 0.66 0.424561
Target:  5'- -gUGuUGGAcaAGGCCAucGCCGCCGCGg-- -3'
miRNA:   3'- caAC-GCCU--UCCGGU--CGGUGGCGUgga -5'
11452 5' -59.8 NC_003085.1 + 9568 0.66 0.424561
Target:  5'- --gGCGuuuGGCCuGCCGCCGCcgagcACCg -3'
miRNA:   3'- caaCGCcuuCCGGuCGGUGGCG-----UGGa -5'
11452 5' -59.8 NC_003085.1 + 17677 0.66 0.415189
Target:  5'- --aGCGGccGGGCCGcuucGCCcaACCGCACgCUa -3'
miRNA:   3'- caaCGCCu-UCCGGU----CGG--UGGCGUG-GA- -5'
11452 5' -59.8 NC_003085.1 + 18125 0.66 0.405946
Target:  5'- --gGCGGGAcGGCCGGCCugggaCGuCugCUg -3'
miRNA:   3'- caaCGCCUU-CCGGUCGGug---GC-GugGA- -5'
11452 5' -59.8 NC_003085.1 + 19069 0.66 0.405029
Target:  5'- --gGCGGAgcaggcgccGGGCCcggacggAGUgCGCCGCACCc -3'
miRNA:   3'- caaCGCCU---------UCCGG-------UCG-GUGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 12931 0.66 0.396833
Target:  5'- --gGCGGGcuGUCAGUCGCCGuCGCUa -3'
miRNA:   3'- caaCGCCUucCGGUCGGUGGC-GUGGa -5'
11452 5' -59.8 NC_003085.1 + 7328 0.66 0.396833
Target:  5'- --cGCGGAGGcggcugaggacGCgGGCUACaCGCGCCc -3'
miRNA:   3'- caaCGCCUUC-----------CGgUCGGUG-GCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 39065 0.66 0.396833
Target:  5'- -cUGCuGGAAGGCggugugaaCAGCCuCCGCAUa- -3'
miRNA:   3'- caACG-CCUUCCG--------GUCGGuGGCGUGga -5'
11452 5' -59.8 NC_003085.1 + 42763 0.66 0.387853
Target:  5'- -gUGCGGugcAGGgCGGCCgcaaGCCGCuCCa -3'
miRNA:   3'- caACGCCu--UCCgGUCGG----UGGCGuGGa -5'
11452 5' -59.8 NC_003085.1 + 31142 0.66 0.387853
Target:  5'- cGUUGCGGcugcccuucgGAcGGCCAGCgccggggcgugCACCGC-CCg -3'
miRNA:   3'- -CAACGCC----------UU-CCGGUCG-----------GUGGCGuGGa -5'
11452 5' -59.8 NC_003085.1 + 15027 0.66 0.387853
Target:  5'- cUUGCcgcuGGGCCGGCCcaaGCCGCAgCCc -3'
miRNA:   3'- cAACGccu-UCCGGUCGG---UGGCGU-GGa -5'
11452 5' -59.8 NC_003085.1 + 34944 0.66 0.387853
Target:  5'- --gGCGGAGuugcuGGCCGGCgGagGCGCCUc -3'
miRNA:   3'- caaCGCCUU-----CCGGUCGgUggCGUGGA- -5'
11452 5' -59.8 NC_003085.1 + 20280 0.66 0.387853
Target:  5'- --gGCGGAugAGGCgaAGCCcaagGCCGUGCCc -3'
miRNA:   3'- caaCGCCU--UCCGg-UCGG----UGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 9154 0.67 0.379008
Target:  5'- --gGCGGA--GCUcGCCGCCGCGCa- -3'
miRNA:   3'- caaCGCCUucCGGuCGGUGGCGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.