miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11455 5' -53.6 NC_003085.1 + 42495 0.66 0.788109
Target:  5'- cGGAGCCaacGGAgagggcaucGCUGCCGAAg-UCGa -3'
miRNA:   3'- aCUUCGG---CCUa--------CGACGGCUUgaAGCg -5'
11455 5' -53.6 NC_003085.1 + 6298 0.66 0.788109
Target:  5'- gUGGAGCgacUGGA-GCagGCCGAGCgggaaccgCGCa -3'
miRNA:   3'- -ACUUCG---GCCUaCGa-CGGCUUGaa------GCG- -5'
11455 5' -53.6 NC_003085.1 + 1038 0.66 0.788109
Target:  5'- uUGAAGCa-GAagGC-GCCGAACUgccCGCg -3'
miRNA:   3'- -ACUUCGgcCUa-CGaCGGCUUGAa--GCG- -5'
11455 5' -53.6 NC_003085.1 + 45870 0.66 0.788109
Target:  5'- cGGAGCCGGugggGCUGUCuguCUgccacaggCGCa -3'
miRNA:   3'- aCUUCGGCCua--CGACGGcuuGAa-------GCG- -5'
11455 5' -53.6 NC_003085.1 + 3408 0.66 0.788109
Target:  5'- cGAAgGgCGGGUGCaGCCGua--UCGCg -3'
miRNA:   3'- aCUU-CgGCCUACGaCGGCuugaAGCG- -5'
11455 5' -53.6 NC_003085.1 + 38186 0.66 0.785082
Target:  5'- cGAAGCCGGGcccacuCUGCCuucgaggugucaccGGACUUgcCGCg -3'
miRNA:   3'- aCUUCGGCCUac----GACGG--------------CUUGAA--GCG- -5'
11455 5' -53.6 NC_003085.1 + 12742 0.66 0.777961
Target:  5'- aGggGCCGGAgguggUGCgUGUCGAGgUg-GCc -3'
miRNA:   3'- aCuuCGGCCU-----ACG-ACGGCUUgAagCG- -5'
11455 5' -53.6 NC_003085.1 + 7130 0.66 0.777961
Target:  5'- gGAAGuCCaGGAUGCUGgCGAcCUgUGUg -3'
miRNA:   3'- aCUUC-GG-CCUACGACgGCUuGAaGCG- -5'
11455 5' -53.6 NC_003085.1 + 21872 0.66 0.767656
Target:  5'- gUGAAGCCcGAg---GCCGugucccuccagGACUUCGCg -3'
miRNA:   3'- -ACUUCGGcCUacgaCGGC-----------UUGAAGCG- -5'
11455 5' -53.6 NC_003085.1 + 27472 0.66 0.757204
Target:  5'- cUGGAGCaggaaGGGagcGCUGCCGGGCaccUGCu -3'
miRNA:   3'- -ACUUCGg----CCUa--CGACGGCUUGaa-GCG- -5'
11455 5' -53.6 NC_003085.1 + 26609 0.66 0.757204
Target:  5'- -----gUGGgcGCUGCCGGACUcuccuUCGCu -3'
miRNA:   3'- acuucgGCCuaCGACGGCUUGA-----AGCG- -5'
11455 5' -53.6 NC_003085.1 + 26555 0.66 0.746619
Target:  5'- gGAGGCuCGGAgac-GCCGAACgccgaCGCa -3'
miRNA:   3'- aCUUCG-GCCUacgaCGGCUUGaa---GCG- -5'
11455 5' -53.6 NC_003085.1 + 45738 0.66 0.746619
Target:  5'- ---uGCgCGGGUGCUGCCu-GCgUCGUc -3'
miRNA:   3'- acuuCG-GCCUACGACGGcuUGaAGCG- -5'
11455 5' -53.6 NC_003085.1 + 39506 0.66 0.746619
Target:  5'- aGAAGCCGG-UGC-GCCucg--UCGCu -3'
miRNA:   3'- aCUUCGGCCuACGaCGGcuugaAGCG- -5'
11455 5' -53.6 NC_003085.1 + 47522 0.66 0.735912
Target:  5'- cGAAGCC----GCUGCCGuucuGCUUcCGCc -3'
miRNA:   3'- aCUUCGGccuaCGACGGCu---UGAA-GCG- -5'
11455 5' -53.6 NC_003085.1 + 14352 0.66 0.735912
Target:  5'- aGggGCCGGAc-CUGCCacucaacgGggUgacgUCGCa -3'
miRNA:   3'- aCuuCGGCCUacGACGG--------CuuGa---AGCG- -5'
11455 5' -53.6 NC_003085.1 + 27530 0.67 0.725096
Target:  5'- aUGAAGCUGGcga-UGCCGGACa--GCa -3'
miRNA:   3'- -ACUUCGGCCuacgACGGCUUGaagCG- -5'
11455 5' -53.6 NC_003085.1 + 20411 0.67 0.714183
Target:  5'- -cAGGCUGGuggccaacUGCUGCUGGACggCGUu -3'
miRNA:   3'- acUUCGGCCu-------ACGACGGCUUGaaGCG- -5'
11455 5' -53.6 NC_003085.1 + 44640 0.67 0.703185
Target:  5'- cGAGGuuGGcucagaGUGUcggUGCCGGGCUUUGg -3'
miRNA:   3'- aCUUCggCC------UACG---ACGGCUUGAAGCg -5'
11455 5' -53.6 NC_003085.1 + 40612 0.67 0.703185
Target:  5'- aGggGCCugugcugacGGccGCUGCCGucCUcgUCGCc -3'
miRNA:   3'- aCuuCGG---------CCuaCGACGGCuuGA--AGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.