miRNA display CGI


Results 1 - 20 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11459 5' -61.1 NC_003085.1 + 848 0.66 0.421894
Target:  5'- aGGCAUa-CgGCGCCaaGCGCAucgcuCGCGCCu -3'
miRNA:   3'- -CCGUAcaGgCGCGG--CGCGU-----GCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 36339 0.66 0.421894
Target:  5'- cGCAguaGUCacagaGC-CCGCGCucACGCACCu -3'
miRNA:   3'- cCGUa--CAGg----CGcGGCGCG--UGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 34244 0.66 0.416433
Target:  5'- cGCAaGUCCaccuCGCCcacuuccgcggcgcgGCGCugGCGCACCGg -3'
miRNA:   3'- cCGUaCAGGc---GCGG---------------CGCG--UGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 45105 0.66 0.412817
Target:  5'- uGGUccagGUCgCGCGCgGCGUAgGCAUUGc -3'
miRNA:   3'- -CCGua--CAG-GCGCGgCGCGUgCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 18435 0.66 0.412817
Target:  5'- gGGCcuuUGcCCGCGUCGUGgACGUcCUGg -3'
miRNA:   3'- -CCGu--ACaGGCGCGGCGCgUGCGuGGC- -5'
11459 5' -61.1 NC_003085.1 + 12023 0.66 0.412817
Target:  5'- uGGCGcaccUGcCgGUGCUGCGCGacuucgUGCGCCGc -3'
miRNA:   3'- -CCGU----ACaGgCGCGGCGCGU------GCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 39951 0.66 0.412817
Target:  5'- aGCcgAUGaCC-CGCCGCGCGC-CGCCa -3'
miRNA:   3'- cCG--UACaGGcGCGGCGCGUGcGUGGc -5'
11459 5' -61.1 NC_003085.1 + 30731 0.66 0.412817
Target:  5'- cGGCAUG-CUGCGCaggaaG-GCGCGUcCCGu -3'
miRNA:   3'- -CCGUACaGGCGCGg----CgCGUGCGuGGC- -5'
11459 5' -61.1 NC_003085.1 + 45881 0.66 0.407429
Target:  5'- gGGCugucUGUCUGCcacaggcgcagguucGCCGUGUGCGC-CCa -3'
miRNA:   3'- -CCGu---ACAGGCG---------------CGGCGCGUGCGuGGc -5'
11459 5' -61.1 NC_003085.1 + 1503 0.66 0.403862
Target:  5'- cGGCccGUCCgGCGCuCGgGCAagagGCAgCCGa -3'
miRNA:   3'- -CCGuaCAGG-CGCG-GCgCGUg---CGU-GGC- -5'
11459 5' -61.1 NC_003085.1 + 12297 0.66 0.403862
Target:  5'- cGGCGcggugGUCCGCuggGuuGCgGCGCaCACCGa -3'
miRNA:   3'- -CCGUa----CAGGCG---CggCG-CGUGcGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 40889 0.66 0.400315
Target:  5'- gGGCAUc-CUGCGCCGCgaccucaagaccuGCgugacgagcucgccGCGCGCCGa -3'
miRNA:   3'- -CCGUAcaGGCGCGGCG-------------CG--------------UGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 41358 0.66 0.395031
Target:  5'- cGGCAgg-CCGgGCCGCGuCACcCACg- -3'
miRNA:   3'- -CCGUacaGGCgCGGCGC-GUGcGUGgc -5'
11459 5' -61.1 NC_003085.1 + 40771 0.66 0.395031
Target:  5'- aGGCccacccgaaGUgCGCGCaCGCGuCGCGCGCgGa -3'
miRNA:   3'- -CCGua-------CAgGCGCG-GCGC-GUGCGUGgC- -5'
11459 5' -61.1 NC_003085.1 + 25907 0.66 0.395031
Target:  5'- cGCAacgCCGCGCCGaGCA-GCGCCc -3'
miRNA:   3'- cCGUacaGGCGCGGCgCGUgCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 21890 0.66 0.395031
Target:  5'- uGGCcggGUCCGUGCCcugccagaugGCG-ACGuCACCGc -3'
miRNA:   3'- -CCGua-CAGGCGCGG----------CGCgUGC-GUGGC- -5'
11459 5' -61.1 NC_003085.1 + 17845 0.66 0.395031
Target:  5'- gGGCAgUGcUgGUGCC-CGCAgGCGCCGu -3'
miRNA:   3'- -CCGU-ACaGgCGCGGcGCGUgCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 33255 0.66 0.395031
Target:  5'- cGGCAguauucaGUCCuCGCgCGCGaGCGUACCu -3'
miRNA:   3'- -CCGUa------CAGGcGCG-GCGCgUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 32167 0.66 0.394155
Target:  5'- cGGCGUcGgccaggCUGCGCCaguggugGCGCGCGUGCUu -3'
miRNA:   3'- -CCGUA-Ca-----GGCGCGG-------CGCGUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 34582 0.66 0.389793
Target:  5'- uGGCGgcgaacaccugcucGUCCGUcaccUUGCGCGCGCGCCu -3'
miRNA:   3'- -CCGUa-------------CAGGCGc---GGCGCGUGCGUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.