miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11461 3' -62.4 NC_003085.1 + 48690 0.66 0.375078
Target:  5'- gGCgCACCGUUGCgCGGcGUgGCGGacUCGCCc -3'
miRNA:   3'- -CG-GUGGCGGUG-GUC-CGgUGCC--AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 20865 0.66 0.375078
Target:  5'- cGCCACa-CCACCGGcguguccaccGCCAUGuG-CGCCu -3'
miRNA:   3'- -CGGUGgcGGUGGUC----------CGGUGC-CaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 40480 0.66 0.375078
Target:  5'- uCUACCGggccggugaaguCCGCgAGGCCGCGGcccuUgGCCc -3'
miRNA:   3'- cGGUGGC------------GGUGgUCCGGUGCC----AgCGG- -5'
11461 3' -62.4 NC_003085.1 + 25297 0.66 0.375078
Target:  5'- cGCgACgGCCgGCCAGguggacgacGCCGUGGUgGCCa -3'
miRNA:   3'- -CGgUGgCGG-UGGUC---------CGGUGCCAgCGG- -5'
11461 3' -62.4 NC_003085.1 + 24374 0.66 0.375078
Target:  5'- gGCgGCCggGCCAUCAauGGCCuggACGGggccgUGCCg -3'
miRNA:   3'- -CGgUGG--CGGUGGU--CCGG---UGCCa----GCGG- -5'
11461 3' -62.4 NC_003085.1 + 20960 0.66 0.375078
Target:  5'- uCCACCGCCugaauGGCgCGCGcGUUGCg -3'
miRNA:   3'- cGGUGGCGGuggu-CCG-GUGC-CAGCGg -5'
11461 3' -62.4 NC_003085.1 + 7356 0.66 0.375078
Target:  5'- uGCCGuccuCCGCCACCucGaCACGGa-GCCg -3'
miRNA:   3'- -CGGU----GGCGGUGGucCgGUGCCagCGG- -5'
11461 3' -62.4 NC_003085.1 + 5950 0.66 0.374239
Target:  5'- cGCCGuucCCGUCcacGCCGGGCUgcuggagGCGGUgGgCCg -3'
miRNA:   3'- -CGGU---GGCGG---UGGUCCGG-------UGCCAgC-GG- -5'
11461 3' -62.4 NC_003085.1 + 47804 0.66 0.372566
Target:  5'- cGUCGCCGCguugguaguagggaCGgCAGGCCAUGacuaCGCCu -3'
miRNA:   3'- -CGGUGGCG--------------GUgGUCCGGUGCca--GCGG- -5'
11461 3' -62.4 NC_003085.1 + 41253 0.66 0.366749
Target:  5'- cGCCACgCGCgGCaggcuggacuggCGGGCCAUGcacagCGCCc -3'
miRNA:   3'- -CGGUG-GCGgUG------------GUCCGGUGCca---GCGG- -5'
11461 3' -62.4 NC_003085.1 + 23367 0.66 0.366749
Target:  5'- gGCaGCCGUgucCCAGGCCAUGcGUCaCCg -3'
miRNA:   3'- -CGgUGGCGgu-GGUCCGGUGC-CAGcGG- -5'
11461 3' -62.4 NC_003085.1 + 49273 0.66 0.366749
Target:  5'- cGUCAUgGCCACCcccuguGGCUGCuGcGUCGCg -3'
miRNA:   3'- -CGGUGgCGGUGGu-----CCGGUG-C-CAGCGg -5'
11461 3' -62.4 NC_003085.1 + 42518 0.66 0.366749
Target:  5'- uUCGCaCGCCACCugcguGGCCuccCGcuUCGCCu -3'
miRNA:   3'- cGGUG-GCGGUGGu----CCGGu--GCc-AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 10610 0.66 0.366749
Target:  5'- uGUCGCCGCgCGCCgucgcaguGGGacgaCGCGGcagugCGCCc -3'
miRNA:   3'- -CGGUGGCG-GUGG--------UCCg---GUGCCa----GCGG- -5'
11461 3' -62.4 NC_003085.1 + 9125 0.66 0.358548
Target:  5'- nCCACCGcCCACUgAGGCaCGCGccaGCCc -3'
miRNA:   3'- cGGUGGC-GGUGG-UCCG-GUGCcagCGG- -5'
11461 3' -62.4 NC_003085.1 + 27593 0.66 0.358548
Target:  5'- gGCCAguuCgGCCACCuucGGCCugcGCGGUguguggaGCCu -3'
miRNA:   3'- -CGGU---GgCGGUGGu--CCGG---UGCCAg------CGG- -5'
11461 3' -62.4 NC_003085.1 + 14805 0.66 0.358548
Target:  5'- gGCCGacauCCuCCGCgAGGCCAUcgcggaguGGUgCGCCa -3'
miRNA:   3'- -CGGU----GGcGGUGgUCCGGUG--------CCA-GCGG- -5'
11461 3' -62.4 NC_003085.1 + 24043 0.66 0.358548
Target:  5'- cGCCAuccUCGCCcGCCuGGCgaagCGCGGgaaGCCg -3'
miRNA:   3'- -CGGU---GGCGG-UGGuCCG----GUGCCag-CGG- -5'
11461 3' -62.4 NC_003085.1 + 32259 0.66 0.358548
Target:  5'- -aCAgCGC--CCAGGCCuCGGUgGCCc -3'
miRNA:   3'- cgGUgGCGguGGUCCGGuGCCAgCGG- -5'
11461 3' -62.4 NC_003085.1 + 7100 0.66 0.350476
Target:  5'- cGCCAUCcUCGCC-GGCCggaagACGGUcacgCGCCg -3'
miRNA:   3'- -CGGUGGcGGUGGuCCGG-----UGCCA----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.