Results 21 - 40 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11473 | 3' | -56.5 | NC_003085.1 | + | 32700 | 0.67 | 0.614791 |
Target: 5'- cGCGuCGucugguaGCGCUcGGGUAGCGACaacaACCg -3' miRNA: 3'- -CGCuGC-------UGCGGcUCCAUCGCUGc---UGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 46109 | 0.67 | 0.622321 |
Target: 5'- -gGGCucacgGGCGUCGGGGagcgucgucuguGCGGCGACCa -3' miRNA: 3'- cgCUG-----CUGCGGCUCCau----------CGCUGCUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 4473 | 0.66 | 0.668541 |
Target: 5'- cGCGACGACGagGGcacGGUgacgaagcgcgcuGGCGACugGGCCa -3' miRNA: 3'- -CGCUGCUGCggCU---CCA-------------UCGCUG--CUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 38061 | 0.66 | 0.690941 |
Target: 5'- cGCGGCGGugcgucaGCCGGcGGUAGCGcuCcACCc -3' miRNA: 3'- -CGCUGCUg------CGGCU-CCAUCGCu-GcUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 48774 | 0.69 | 0.490071 |
Target: 5'- cGCGccCGAgGCCGgacgcgggacAGGUGGCcGGCGACg -3' miRNA: 3'- -CGCu-GCUgCGGC----------UCCAUCG-CUGCUGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 8668 | 0.68 | 0.551894 |
Target: 5'- cGCGugGccuuggGCGCCGGGGUGcCGuCcGCCa -3' miRNA: 3'- -CGCugC------UGCGGCUCCAUcGCuGcUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 3663 | 0.67 | 0.626625 |
Target: 5'- gGUGGCGAgGuuGgAGGcAGgGACGGCg -3' miRNA: 3'- -CGCUGCUgCggC-UCCaUCgCUGCUGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 39725 | 0.66 | 0.690941 |
Target: 5'- cGCGcccuggacuccAUGACGCCGAGGacacacaGGCGuucCGGCg -3' miRNA: 3'- -CGC-----------UGCUGCGGCUCCa------UCGCu--GCUGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 18243 | 0.67 | 0.583707 |
Target: 5'- gGCGAC-ACGCCGAuGUccgaGGCGAU-ACCg -3' miRNA: 3'- -CGCUGcUGCGGCUcCA----UCGCUGcUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 9033 | 0.66 | 0.695184 |
Target: 5'- -gGACGGCGgcaggcagcgcgccuCCGaAGGUGGUGAggaguuggaugcCGGCCa -3' miRNA: 3'- cgCUGCUGC---------------GGC-UCCAUCGCU------------GCUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 2393 | 0.67 | 0.626625 |
Target: 5'- cGUGGcCGAcauggacacCGCCGAgcuGGUGGUGACGAa- -3' miRNA: 3'- -CGCU-GCU---------GCGGCU---CCAUCGCUGCUgg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 8798 | 0.67 | 0.605122 |
Target: 5'- cCGGCGGCuCCgcGAGGUugcGCGGCGcaGCCa -3' miRNA: 3'- cGCUGCUGcGG--CUCCAu--CGCUGC--UGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 3088 | 0.66 | 0.648146 |
Target: 5'- cGUGACGA-GCCGcAGGc--CGACGGCg -3' miRNA: 3'- -CGCUGCUgCGGC-UCCaucGCUGCUGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 7462 | 0.66 | 0.658891 |
Target: 5'- cCGACGcCGCCGGGGcAGgaacaCGGCGAg- -3' miRNA: 3'- cGCUGCuGCGGCUCCaUC-----GCUGCUgg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 16735 | 0.66 | 0.669611 |
Target: 5'- uGCGAUGGCauccUCGGuGUGGCGACGcACUg -3' miRNA: 3'- -CGCUGCUGc---GGCUcCAUCGCUGC-UGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 19350 | 0.66 | 0.690941 |
Target: 5'- -nGAUGGCGuCCGu-GUAGaggaGGCGGCCg -3' miRNA: 3'- cgCUGCUGC-GGCucCAUCg---CUGCUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 29555 | 0.7 | 0.441124 |
Target: 5'- uGCGGCagGACGUgcuUGAGGUAGCGGuaGCCc -3' miRNA: 3'- -CGCUG--CUGCG---GCUCCAUCGCUgcUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 15871 | 0.69 | 0.490071 |
Target: 5'- gGCGugGGCaccugaCGcAGGUAGUGACGuguCCa -3' miRNA: 3'- -CGCugCUGcg----GC-UCCAUCGCUGCu--GG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 9341 | 0.68 | 0.530976 |
Target: 5'- cGCGGCGGCcaggaccagcaGCCGAGGUcgGGgGACucGCUg -3' miRNA: 3'- -CGCUGCUG-----------CGGCUCCA--UCgCUGc-UGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 5494 | 0.68 | 0.542447 |
Target: 5'- cGCGGCGugGggCCGGGccgugagggagcacGUgaacgaggacacaacGGCGGCGGCCa -3' miRNA: 3'- -CGCUGCugC--GGCUC--------------CA---------------UCGCUGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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