miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 5' -54.7 NC_003085.1 + 7918 0.66 0.736025
Target:  5'- gCcgCcGCGGCGGcAGCAGAcGUCAcuCCa -3'
miRNA:   3'- -GuaGcCGCCGCC-UUGUCU-CGGUuuGG- -5'
11482 5' -54.7 NC_003085.1 + 43279 0.66 0.736025
Target:  5'- uGUCGGCaccGuCGGcAC-GAGCCAGGCUg -3'
miRNA:   3'- gUAGCCGc--C-GCCuUGuCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 40782 0.66 0.736025
Target:  5'- aCGUUGGCGGaCGGcacccCGGcGCCcaAGGCCa -3'
miRNA:   3'- -GUAGCCGCC-GCCuu---GUCuCGG--UUUGG- -5'
11482 5' -54.7 NC_003085.1 + 42108 0.66 0.736025
Target:  5'- uGUCgaGGUGGCGGAggACGGcaAGCgAAugCa -3'
miRNA:   3'- gUAG--CCGCCGCCU--UGUC--UCGgUUugG- -5'
11482 5' -54.7 NC_003085.1 + 37988 0.66 0.736025
Target:  5'- gCGUCuGCGGCGGugGugGGAcGCuCAcACCg -3'
miRNA:   3'- -GUAGcCGCCGCC--UugUCU-CG-GUuUGG- -5'
11482 5' -54.7 NC_003085.1 + 26909 0.66 0.736025
Target:  5'- cCGUCu-CGGCGG-GCAGcGCCAuGCCu -3'
miRNA:   3'- -GUAGccGCCGCCuUGUCuCGGUuUGG- -5'
11482 5' -54.7 NC_003085.1 + 11345 0.66 0.736025
Target:  5'- ---aGGUGGCGGAAgaacuCGGcgucAGCCAGgacACCg -3'
miRNA:   3'- guagCCGCCGCCUU-----GUC----UCGGUU---UGG- -5'
11482 5' -54.7 NC_003085.1 + 33875 0.66 0.736025
Target:  5'- --aCGGCGGCGGggUuu-GC--GACCu -3'
miRNA:   3'- guaGCCGCCGCCuuGucuCGguUUGG- -5'
11482 5' -54.7 NC_003085.1 + 40842 0.66 0.734962
Target:  5'- --aCGGCGGCcGGGCuG-GCCAAccuggagGCCa -3'
miRNA:   3'- guaGCCGCCGcCUUGuCuCGGUU-------UGG- -5'
11482 5' -54.7 NC_003085.1 + 34192 0.66 0.725349
Target:  5'- ---gGcGCGGCGGGugAGcucGGCCGcGGCCu -3'
miRNA:   3'- guagC-CGCCGCCUugUC---UCGGU-UUGG- -5'
11482 5' -54.7 NC_003085.1 + 1018 0.66 0.725349
Target:  5'- --aCGGUggcuguugGGCGGAauugaaGCAGAaggcGCCGAACUg -3'
miRNA:   3'- guaGCCG--------CCGCCU------UGUCU----CGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 34232 0.66 0.725349
Target:  5'- --aCGGCGuaauggccacCGGGGCAGGGCCcucGCCc -3'
miRNA:   3'- guaGCCGCc---------GCCUUGUCUCGGuu-UGG- -5'
11482 5' -54.7 NC_003085.1 + 22707 0.66 0.725349
Target:  5'- gGUUGGUGGCGa---AGGGCC--GCCg -3'
miRNA:   3'- gUAGCCGCCGCcuugUCUCGGuuUGG- -5'
11482 5' -54.7 NC_003085.1 + 544 0.66 0.722128
Target:  5'- -uUCGGCagccagGGCGGGguggccgucgaaguGCAGGG-CGAGCCc -3'
miRNA:   3'- guAGCCG------CCGCCU--------------UGUCUCgGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 40315 0.66 0.714579
Target:  5'- --gCGGCGGC-GAGCuccGCCAGguGCCg -3'
miRNA:   3'- guaGCCGCCGcCUUGucuCGGUU--UGG- -5'
11482 5' -54.7 NC_003085.1 + 10569 0.66 0.714579
Target:  5'- aGUCGGCGGCGccguaguguuGCAGuacCCGAACa -3'
miRNA:   3'- gUAGCCGCCGCcu--------UGUCuc-GGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 18344 0.66 0.714579
Target:  5'- -cUCGGCGcGCuGcuCGGGGUUGAGCCg -3'
miRNA:   3'- guAGCCGC-CGcCuuGUCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 19342 0.66 0.713497
Target:  5'- --cCGGCGGCGGAugGcguccguguagagGAGgC-GGCCg -3'
miRNA:   3'- guaGCCGCCGCCUugU-------------CUCgGuUUGG- -5'
11482 5' -54.7 NC_003085.1 + 22943 0.66 0.703726
Target:  5'- gCGUCGaCGGCGcGGCGaAGCCGGACg -3'
miRNA:   3'- -GUAGCcGCCGCcUUGUcUCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 28233 0.66 0.703726
Target:  5'- cCAUgGGUGGCGGcAGCGGuacuugggacGGCUccACCu -3'
miRNA:   3'- -GUAgCCGCCGCC-UUGUC----------UCGGuuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.