miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11492 5' -55.9 NC_003085.1 + 45503 0.66 0.691629
Target:  5'- gCCGUCu--GGCuccaucCCCGGGC-CGCg -3'
miRNA:   3'- -GGCAGuguCCGuuuc--GGGCUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 30517 0.66 0.691629
Target:  5'- aCCGUC---GGCGGGGCCCuguaGGCgauggCGCu -3'
miRNA:   3'- -GGCAGuguCCGUUUCGGGc---UCGa----GCG- -5'
11492 5' -55.9 NC_003085.1 + 8065 0.66 0.691629
Target:  5'- aCCGaguCAGGCAuGGCCgguacaUGAGCggagCGCa -3'
miRNA:   3'- -GGCaguGUCCGUuUCGG------GCUCGa---GCG- -5'
11492 5' -55.9 NC_003085.1 + 16565 0.66 0.691629
Target:  5'- aCGUCGaAGGCGGacGGcCCCGAuGCUC-Ca -3'
miRNA:   3'- gGCAGUgUCCGUU--UC-GGGCU-CGAGcG- -5'
11492 5' -55.9 NC_003085.1 + 10621 0.66 0.691629
Target:  5'- gCCGUCGCAgugggacgacgcGGCAGugcGCCCu-GCUCa- -3'
miRNA:   3'- -GGCAGUGU------------CCGUUu--CGGGcuCGAGcg -5'
11492 5' -55.9 NC_003085.1 + 12018 0.66 0.691629
Target:  5'- gCgGUgGCGGGCGcgGGGUUgGcGCUCGCu -3'
miRNA:   3'- -GgCAgUGUCCGU--UUCGGgCuCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 31293 0.66 0.690546
Target:  5'- uCCGguaagCGCGGGCAGGcgcGCCCGAcaccgaaGcCUCaGCa -3'
miRNA:   3'- -GGCa----GUGUCCGUUU---CGGGCU-------C-GAG-CG- -5'
11492 5' -55.9 NC_003085.1 + 34825 0.66 0.680771
Target:  5'- uUCGUCGgAGGUGGgcgucacacAGCCCauGAGCUucgaCGCg -3'
miRNA:   3'- -GGCAGUgUCCGUU---------UCGGG--CUCGA----GCG- -5'
11492 5' -55.9 NC_003085.1 + 32473 0.66 0.680771
Target:  5'- cUCGUCGCcgucGGCGucgcGGGCCCgGAGCgucaucUCGUg -3'
miRNA:   3'- -GGCAGUGu---CCGU----UUCGGG-CUCG------AGCG- -5'
11492 5' -55.9 NC_003085.1 + 16379 0.66 0.680771
Target:  5'- uCCaggCGCGGGCAAAGUuggcaggugUCGAGggCGCg -3'
miRNA:   3'- -GGca-GUGUCCGUUUCG---------GGCUCgaGCG- -5'
11492 5' -55.9 NC_003085.1 + 44732 0.66 0.669868
Target:  5'- uUCGUgCACGGGaagccGAGuUCCGcGCUCGCu -3'
miRNA:   3'- -GGCA-GUGUCCgu---UUC-GGGCuCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 46447 0.66 0.658928
Target:  5'- aCCGUC-UGGGCGucGUCCGuGCgcccaGCg -3'
miRNA:   3'- -GGCAGuGUCCGUuuCGGGCuCGag---CG- -5'
11492 5' -55.9 NC_003085.1 + 17641 0.66 0.658928
Target:  5'- cCUG-CGCAGGCGuGAGCCaCGGGagggaggCGCu -3'
miRNA:   3'- -GGCaGUGUCCGU-UUCGG-GCUCga-----GCG- -5'
11492 5' -55.9 NC_003085.1 + 7036 0.66 0.658928
Target:  5'- cUCG-CGCGGGguGGGCgaUGAGCcCGCg -3'
miRNA:   3'- -GGCaGUGUCCguUUCGg-GCUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 40619 0.66 0.647964
Target:  5'- aCGUCAU-GGCc--GCCCcuccuGCUCGCg -3'
miRNA:   3'- gGCAGUGuCCGuuuCGGGcu---CGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 47852 0.66 0.647964
Target:  5'- gCGUCAucCGGGguGAGgUCGAGCgagacgucagCGCg -3'
miRNA:   3'- gGCAGU--GUCCguUUCgGGCUCGa---------GCG- -5'
11492 5' -55.9 NC_003085.1 + 11127 0.66 0.636986
Target:  5'- -aGUUGCGcGuGCcAGGCCCGAGCUUuagGCa -3'
miRNA:   3'- ggCAGUGU-C-CGuUUCGGGCUCGAG---CG- -5'
11492 5' -55.9 NC_003085.1 + 19790 0.66 0.633691
Target:  5'- aCGUCGCgAGGUGGAcGCCCGAcaugacuucuguggGCagGCg -3'
miRNA:   3'- gGCAGUG-UCCGUUU-CGGGCU--------------CGagCG- -5'
11492 5' -55.9 NC_003085.1 + 9124 0.66 0.633691
Target:  5'- gCUGUCGCGaccucucugggagcGGCAccuGgCgGAGCUCGCc -3'
miRNA:   3'- -GGCAGUGU--------------CCGUuu-CgGgCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 17975 0.67 0.626003
Target:  5'- gCCGgcagCGCGGGCcgcAGGGCaCgGAGCU-GCg -3'
miRNA:   3'- -GGCa---GUGUCCG---UUUCG-GgCUCGAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.