miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 3' -50.9 NC_003085.1 + 31735 0.66 0.918758
Target:  5'- aCGAGAuUGGCGGACuca-UCG-GGCGCa -3'
miRNA:   3'- -GUUCU-ACUGCCUGugcgAGUaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 30330 0.66 0.918758
Target:  5'- gCGGGcccUGGCGGACGCuGUcgCggGGCGCa -3'
miRNA:   3'- -GUUCu--ACUGCCUGUG-CGa-GuaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 500 0.66 0.918758
Target:  5'- gGAGAUGAa-GGCGCGCgggccggaCcgGAUGCg -3'
miRNA:   3'- gUUCUACUgcCUGUGCGa-------GuaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 18875 0.66 0.914918
Target:  5'- gAAGGcUGAUGGAgccgggcgagguccaCACGCUCuacGGCGUa -3'
miRNA:   3'- gUUCU-ACUGCCU---------------GUGCGAGua-CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 16612 0.66 0.912299
Target:  5'- gGGGAUGugGcaugaGCACGCUCAauaucgggaaGACGUg -3'
miRNA:   3'- gUUCUACugCc----UGUGCGAGUa---------CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 12835 0.66 0.912299
Target:  5'- aCAGGcaAUGACaGACGCGaaC-UGGCGCa -3'
miRNA:   3'- -GUUC--UACUGcCUGUGCgaGuACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 17130 0.66 0.905548
Target:  5'- cCAGGAggcacugGACGGcgucugcuacugGCGCGCUgAggcgGACGUg -3'
miRNA:   3'- -GUUCUa------CUGCC------------UGUGCGAgUa---CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 4385 0.66 0.905548
Target:  5'- uCGAGAguaGACGcguuccGGCACGCUg--GGCGCg -3'
miRNA:   3'- -GUUCUa--CUGC------CUGUGCGAguaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 2477 0.66 0.898506
Target:  5'- gGAGAaGuuGGGCgaaACGCUCAaGGCGUg -3'
miRNA:   3'- gUUCUaCugCCUG---UGCGAGUaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 6144 0.66 0.898506
Target:  5'- -cGGA-GACGGACucacgAUGCUCGccgGACGUu -3'
miRNA:   3'- guUCUaCUGCCUG-----UGCGAGUa--CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 28584 0.66 0.898506
Target:  5'- gCAGGcgcacAUGGCgguGGACACGCcgguggUGUGGCGCu -3'
miRNA:   3'- -GUUC-----UACUG---CCUGUGCGa-----GUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 5242 0.66 0.894143
Target:  5'- -uGGAUGuggugguucgacgcuGCGGGCGCGCggCAguACGCg -3'
miRNA:   3'- guUCUAC---------------UGCCUGUGCGa-GUacUGCG- -5'
11504 3' -50.9 NC_003085.1 + 7487 0.66 0.891178
Target:  5'- gGAGGUGACGGGCGucCGCgUCGagcgGuuGCa -3'
miRNA:   3'- gUUCUACUGCCUGU--GCG-AGUa---CugCG- -5'
11504 3' -50.9 NC_003085.1 + 36449 0.66 0.891178
Target:  5'- -cGGAgGGCGG-CGC-CUCAUGGCGa -3'
miRNA:   3'- guUCUaCUGCCuGUGcGAGUACUGCg -5'
11504 3' -50.9 NC_003085.1 + 3696 0.66 0.891178
Target:  5'- uGGGAUG-CGGcCACGCagCGcGACGUg -3'
miRNA:   3'- gUUCUACuGCCuGUGCGa-GUaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 15696 0.66 0.883569
Target:  5'- -uGGAgcacaugGGC-GACACGCUCAacgacaugGACGCg -3'
miRNA:   3'- guUCUa------CUGcCUGUGCGAGUa-------CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 7074 0.66 0.883568
Target:  5'- gAGGAgGACaaGGccCGCGCUCAUGcCGCc -3'
miRNA:   3'- gUUCUaCUG--CCu-GUGCGAGUACuGCG- -5'
11504 3' -50.9 NC_003085.1 + 21765 0.66 0.883568
Target:  5'- -cAGcgGGCGGACGC-C-CA-GACGCg -3'
miRNA:   3'- guUCuaCUGCCUGUGcGaGUaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 18555 0.67 0.875683
Target:  5'- aCGAGGUGGCGGGCAaGgaCGgccaaGCGCu -3'
miRNA:   3'- -GUUCUACUGCCUGUgCgaGUac---UGCG- -5'
11504 3' -50.9 NC_003085.1 + 2067 0.67 0.867529
Target:  5'- cCAAGGcccgGACGGugACGCgacgaGCGCa -3'
miRNA:   3'- -GUUCUa---CUGCCugUGCGaguacUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.