miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 5' -59.9 NC_003085.1 + 31336 0.66 0.435237
Target:  5'- -aGAcGUcCCAGGCCgGcCGuCCCGCCcgcGCCg -3'
miRNA:   3'- aaCU-CA-GGUUCGGgC-GC-GGGUGG---UGG- -5'
11504 5' -59.9 NC_003085.1 + 43905 0.66 0.435237
Target:  5'- gUGGGUCUucagcauGUCCGCcaaccggauGgCCGCCGCCg -3'
miRNA:   3'- aACUCAGGuu-----CGGGCG---------CgGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 9214 0.66 0.435237
Target:  5'- -cGGGaCgUAGGCCCcgGCggcgaagaGCCCGCCACCa -3'
miRNA:   3'- aaCUCaG-GUUCGGG--CG--------CGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 23681 0.66 0.434284
Target:  5'- -aGGcGUCCAcgcagcgGGCCCGCGCagcaGCCuCCu -3'
miRNA:   3'- aaCU-CAGGU-------UCGGGCGCGgg--UGGuGG- -5'
11504 5' -59.9 NC_003085.1 + 16978 0.66 0.425765
Target:  5'- aUGAcGcUCCGGGCCCGCgacGCCgACgGCg -3'
miRNA:   3'- aACU-C-AGGUUCGGGCG---CGGgUGgUGg -5'
11504 5' -59.9 NC_003085.1 + 9092 0.66 0.420141
Target:  5'- -aGAGgcgUC-AGCgCCGCgggcagcagcggcuuGCCCACCGCCc -3'
miRNA:   3'- aaCUCa--GGuUCG-GGCG---------------CGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 22580 0.66 0.416417
Target:  5'- gUUGAGUCCAcccaCCgGCGCCgGCaggugCGCCu -3'
miRNA:   3'- -AACUCAGGUuc--GGgCGCGGgUG-----GUGG- -5'
11504 5' -59.9 NC_003085.1 + 44396 0.66 0.416417
Target:  5'- ---uGUUCGucauCCCGCGCCgCACCAUCu -3'
miRNA:   3'- aacuCAGGUuc--GGGCGCGG-GUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 23338 0.66 0.416417
Target:  5'- cUGGccggCCAAGCgC-CGCCgGCCGCCg -3'
miRNA:   3'- aACUca--GGUUCGgGcGCGGgUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 45698 0.66 0.416417
Target:  5'- -cGAGUCacgGAGCaCUGCGUagaCGCCGCUc -3'
miRNA:   3'- aaCUCAGg--UUCG-GGCGCGg--GUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 26966 0.66 0.416417
Target:  5'- -cGcGUCCGAGCUCG-GCCUGCgcaGCCg -3'
miRNA:   3'- aaCuCAGGUUCGGGCgCGGGUGg--UGG- -5'
11504 5' -59.9 NC_003085.1 + 12960 0.66 0.415489
Target:  5'- -cGcGUCCGgaaggcccggcagAGCuCCGUGCCCugGCUACCu -3'
miRNA:   3'- aaCuCAGGU-------------UCG-GGCGCGGG--UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 9178 0.66 0.415489
Target:  5'- cUGAGUCUguGGGUCgGCGCggguacuCCugCGCCc -3'
miRNA:   3'- aACUCAGG--UUCGGgCGCG-------GGugGUGG- -5'
11504 5' -59.9 NC_003085.1 + 21416 0.66 0.407195
Target:  5'- cUGcuGUCCGAGgCCGCGCagaACgACCu -3'
miRNA:   3'- aACu-CAGGUUCgGGCGCGgg-UGgUGG- -5'
11504 5' -59.9 NC_003085.1 + 28432 0.66 0.407195
Target:  5'- -aGAGUCgAGGCUgGacauaCCGCCGCCa -3'
miRNA:   3'- aaCUCAGgUUCGGgCgcg--GGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 24120 0.66 0.407195
Target:  5'- ---cGUCCGgaAGCgCGCGCCauCCACCu -3'
miRNA:   3'- aacuCAGGU--UCGgGCGCGGguGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 46967 0.66 0.407195
Target:  5'- cUUGAGUgCGgcugaAGCgCCGCGCUgAUgGCCa -3'
miRNA:   3'- -AACUCAgGU-----UCG-GGCGCGGgUGgUGG- -5'
11504 5' -59.9 NC_003085.1 + 43548 0.66 0.403542
Target:  5'- -cGcGUCCAgcuugcgcgagauaGGCCCGCGucaccgaCCCGgCGCCa -3'
miRNA:   3'- aaCuCAGGU--------------UCGGGCGC-------GGGUgGUGG- -5'
11504 5' -59.9 NC_003085.1 + 31465 0.66 0.398102
Target:  5'- --cAGUCCGcgcucucgcAGCuCCGUGCCCugCgGCCc -3'
miRNA:   3'- aacUCAGGU---------UCG-GGCGCGGGugG-UGG- -5'
11504 5' -59.9 NC_003085.1 + 13042 0.66 0.3972
Target:  5'- gUGAGUCCcGGCuCCGUGCggagggugacuuuCCGucguCCACCc -3'
miRNA:   3'- aACUCAGGuUCG-GGCGCG-------------GGU----GGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.