miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11508 3' -54.8 NC_003085.1 + 18017 0.66 0.73246
Target:  5'- ----cGCGAgGCcgUACGUGCcauCCGUGUa -3'
miRNA:   3'- cuuaaCGCUgCG--AUGCGCGu--GGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 34537 0.66 0.73246
Target:  5'- cGAGUUGgaGCGCcACGCGCuggcgGCCgguGCGCa -3'
miRNA:   3'- -CUUAACgcUGCGaUGCGCG-----UGG---CGCG- -5'
11508 3' -54.8 NC_003085.1 + 45194 0.66 0.73246
Target:  5'- cGggUacUGCGACuacuugagGCcaaGCGCGCGaaGCGCu -3'
miRNA:   3'- -CuuA--ACGCUG--------CGa--UGCGCGUggCGCG- -5'
11508 3' -54.8 NC_003085.1 + 15189 0.66 0.73246
Target:  5'- ----gGCuGAgcCGgUGCGCcaGCGCCGCGCc -3'
miRNA:   3'- cuuaaCG-CU--GCgAUGCG--CGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 24925 0.66 0.73246
Target:  5'- ----cGCGcCGC-GCaCGCACCGCGa -3'
miRNA:   3'- cuuaaCGCuGCGaUGcGCGUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 48676 0.66 0.73246
Target:  5'- ----aGaCGACGaacaUGgGCGCACCguuGCGCg -3'
miRNA:   3'- cuuaaC-GCUGCg---AUgCGCGUGG---CGCG- -5'
11508 3' -54.8 NC_003085.1 + 20135 0.66 0.73246
Target:  5'- ------aGGCGCUGCGCaGCuACCGCu- -3'
miRNA:   3'- cuuaacgCUGCGAUGCG-CG-UGGCGcg -5'
11508 3' -54.8 NC_003085.1 + 10241 0.66 0.73246
Target:  5'- ----gGUGGCGCaUugGCauCGCCGUGCc -3'
miRNA:   3'- cuuaaCGCUGCG-AugCGc-GUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 3914 0.66 0.728182
Target:  5'- ---cUGCGACGCcuCGaacuggaagccgaGCGCCGCGg -3'
miRNA:   3'- cuuaACGCUGCGauGCg------------CGUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 27342 0.66 0.721736
Target:  5'- -----cCGGCuGCUGCG-GCGCCGgGCu -3'
miRNA:   3'- cuuaacGCUG-CGAUGCgCGUGGCgCG- -5'
11508 3' -54.8 NC_003085.1 + 20752 0.66 0.721736
Target:  5'- cGAAgcGCaGgGCcaGCGCGCAgcuCCGCGCg -3'
miRNA:   3'- -CUUaaCGcUgCGa-UGCGCGU---GGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 43443 0.66 0.721736
Target:  5'- ----cGCGGCGUccGgGCGUAcauCCGCGCc -3'
miRNA:   3'- cuuaaCGCUGCGa-UgCGCGU---GGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 29191 0.66 0.721736
Target:  5'- ----aGCGcCGCgaggACGCggaGCGCaCGCGCc -3'
miRNA:   3'- cuuaaCGCuGCGa---UGCG---CGUG-GCGCG- -5'
11508 3' -54.8 NC_003085.1 + 26129 0.66 0.721736
Target:  5'- ----gGCGGCGCUugGCcgGCcagaGCgGCGUc -3'
miRNA:   3'- cuuaaCGCUGCGAugCG--CG----UGgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 38160 0.66 0.721736
Target:  5'- ----gGUGGCGCUcccCGC-CGCgGCGCa -3'
miRNA:   3'- cuuaaCGCUGCGAu--GCGcGUGgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 14947 0.66 0.721736
Target:  5'- -uGUUGCuGACGCUGuCGCcGCAcgguCCGUGg -3'
miRNA:   3'- cuUAACG-CUGCGAU-GCG-CGU----GGCGCg -5'
11508 3' -54.8 NC_003085.1 + 18796 0.66 0.710921
Target:  5'- ---aUGCGAgGCgcagaGCGCccuGCCGCaGCg -3'
miRNA:   3'- cuuaACGCUgCGaug--CGCG---UGGCG-CG- -5'
11508 3' -54.8 NC_003085.1 + 30655 0.66 0.710921
Target:  5'- ----gGCGAguCGCUGCggcaggGCGCuCUGCGCc -3'
miRNA:   3'- cuuaaCGCU--GCGAUG------CGCGuGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 41543 0.66 0.710921
Target:  5'- ----aGUGACGuCUGCuGC-CGCCGCGg -3'
miRNA:   3'- cuuaaCGCUGC-GAUG-CGcGUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 37296 0.66 0.710921
Target:  5'- ----aGCGACGC-ACcUGCGgUGCGCa -3'
miRNA:   3'- cuuaaCGCUGCGaUGcGCGUgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.