miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 15760 0.66 0.673621
Target:  5'- cGCUGCaaucGAgGCgUUUGAGCgcgucaacgcguuucUGGAGGCCa -3'
miRNA:   3'- aCGACG----CUgCG-GAGCUUG---------------ACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 10491 0.66 0.658182
Target:  5'- cUGCUGCGcgGCGCaCUgGAGaauccgcGGAAGCg -3'
miRNA:   3'- -ACGACGC--UGCG-GAgCUUga-----CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 7385 0.66 0.658182
Target:  5'- gGCcGaCGGCGCCcgcgUGAACUGGcacGAGUCc -3'
miRNA:   3'- aCGaC-GCUGCGGa---GCUUGACC---UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 41408 0.66 0.658182
Target:  5'- gUGUUGuCGGaGCCUCGGGC-GGcaacAGCCa -3'
miRNA:   3'- -ACGAC-GCUgCGGAGCUUGaCCu---UCGG- -5'
11520 5' -55.8 NC_003085.1 + 24626 0.66 0.658182
Target:  5'- gUGCUGCaGCGCUUCaccucGGCggaGGAGGCg -3'
miRNA:   3'- -ACGACGcUGCGGAGc----UUGa--CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 33013 0.66 0.647123
Target:  5'- gGCagGCG-CGCCUguUGAGCcGGucGCCg -3'
miRNA:   3'- aCGa-CGCuGCGGA--GCUUGaCCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 28364 0.66 0.647123
Target:  5'- cUGCUGCGAgGCCUgGuACUc---GCCg -3'
miRNA:   3'- -ACGACGCUgCGGAgCuUGAccuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 47613 0.66 0.647123
Target:  5'- cGCUGCGcauCGCUcgCGGGCUcgucggucccGGuGGCCg -3'
miRNA:   3'- aCGACGCu--GCGGa-GCUUGA----------CCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 48511 0.66 0.647123
Target:  5'- aUGCUcGCGGCcucGCCguccaugCGGA--GGAAGCCa -3'
miRNA:   3'- -ACGA-CGCUG---CGGa------GCUUgaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 11307 0.66 0.647123
Target:  5'- cGC-GCuGGCGCUUguggacgaGGACUGGAAGUCc -3'
miRNA:   3'- aCGaCG-CUGCGGAg-------CUUGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 3220 0.66 0.647123
Target:  5'- cGCaagGCGAUGCCggCGcuacCUGGGccGGCCc -3'
miRNA:   3'- aCGa--CGCUGCGGa-GCuu--GACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 30489 0.66 0.63605
Target:  5'- ---cGCGACGCCU-GGACUcGAcgacAGCCa -3'
miRNA:   3'- acgaCGCUGCGGAgCUUGAcCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 39499 0.66 0.63605
Target:  5'- aUGgUGCGGgaauCGCCUgCaGGCUGGAuacgAGCCu -3'
miRNA:   3'- -ACgACGCU----GCGGA-GcUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 37071 0.66 0.63605
Target:  5'- cGCUGgGGCGCCagcagUGcccuGCUGGAGucgaagcggcGCCa -3'
miRNA:   3'- aCGACgCUGCGGa----GCu---UGACCUU----------CGG- -5'
11520 5' -55.8 NC_003085.1 + 13330 0.66 0.63605
Target:  5'- aGCUcgagaGCGACuGCCUgGGACUGacgggcGAGGCa -3'
miRNA:   3'- aCGA-----CGCUG-CGGAgCUUGAC------CUUCGg -5'
11520 5' -55.8 NC_003085.1 + 13915 0.66 0.624974
Target:  5'- gGCgUGCGcGCGUUUCGGACgGGgcGCg -3'
miRNA:   3'- aCG-ACGC-UGCGGAGCUUGaCCuuCGg -5'
11520 5' -55.8 NC_003085.1 + 21486 0.66 0.624974
Target:  5'- -uCUGCG-CgGCCUCGGACagcaGGcGGCCg -3'
miRNA:   3'- acGACGCuG-CGGAGCUUGa---CCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 18033 0.67 0.613904
Target:  5'- cGCUGcCGGCGCUUC-AGgUGGccccagcaGAGCCc -3'
miRNA:   3'- aCGAC-GCUGCGGAGcUUgACC--------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 22903 0.67 0.613904
Target:  5'- cGCUGcCGACGUggcaaUCGGAgUcGggGCCg -3'
miRNA:   3'- aCGAC-GCUGCGg----AGCUUgAcCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 43272 0.67 0.60948
Target:  5'- cGCUGCacgagGACGCCgcgaaguaccgcgCGGcgguggagcgACUGGAgcaGGCCg -3'
miRNA:   3'- aCGACG-----CUGCGGa------------GCU----------UGACCU---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.