miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 40636 0.66 0.528343
Target:  5'- uGGgGuCCACCGCgGCCgucaCCGUGCcgUCGUu -3'
miRNA:   3'- -CUgC-GGUGGCG-CGG----GGUACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 15187 0.66 0.528343
Target:  5'- cGCGgCGCgGCGCUCCAUccGCUcgUCGa -3'
miRNA:   3'- cUGCgGUGgCGCGGGGUA--CGAa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 20610 0.66 0.528343
Target:  5'- aGAgGuuCCACCGCGUCUagcguCAUGCgcggagUCGCg -3'
miRNA:   3'- -CUgC--GGUGGCGCGGG-----GUACGaa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 20346 0.66 0.528342
Target:  5'- --gGCCACgGCGCCUCAgcGCgggaGCg -3'
miRNA:   3'- cugCGGUGgCGCGGGGUa-CGaaagCG- -5'
11521 5' -58.4 NC_003085.1 + 40790 0.66 0.528342
Target:  5'- gGACGgCACCccgGCGCCCaagGCcacgCGCg -3'
miRNA:   3'- -CUGCgGUGG---CGCGGGguaCGaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 20240 0.66 0.528342
Target:  5'- -uCGCCACCuuCGCCCaggugGCgcagUCGCu -3'
miRNA:   3'- cuGCGGUGGc-GCGGGgua--CGaa--AGCG- -5'
11521 5' -58.4 NC_003085.1 + 42224 0.66 0.528342
Target:  5'- uGAUGCCACuCaCGUCCCAcgggacgGCUcgCGCu -3'
miRNA:   3'- -CUGCGGUG-GcGCGGGGUa------CGAaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 4787 0.66 0.517881
Target:  5'- --aGCCugCGUccaGCCCCAcUGCgugUGCa -3'
miRNA:   3'- cugCGGugGCG---CGGGGU-ACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 984 0.66 0.517881
Target:  5'- cACGCCGCCGUGUCCaaggGCUa---- -3'
miRNA:   3'- cUGCGGUGGCGCGGGgua-CGAaagcg -5'
11521 5' -58.4 NC_003085.1 + 37035 0.66 0.507504
Target:  5'- cGGCGCCAacauggccCCGCGgCCC-UGCcugUCGa -3'
miRNA:   3'- -CUGCGGU--------GGCGCgGGGuACGaa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 10461 0.66 0.501319
Target:  5'- cGGCGCUuUgGCGCCCCucgGCUggccgaccugcugCGCg -3'
miRNA:   3'- -CUGCGGuGgCGCGGGGua-CGAaa-----------GCG- -5'
11521 5' -58.4 NC_003085.1 + 15368 0.66 0.497215
Target:  5'- cGACGCC-CCGgGCCagCAUGaCgcgggCGCg -3'
miRNA:   3'- -CUGCGGuGGCgCGGg-GUAC-Gaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 39509 0.66 0.497215
Target:  5'- --aGCCGgUGCGCCUCGUcGCUggcaUCGUc -3'
miRNA:   3'- cugCGGUgGCGCGGGGUA-CGAa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 40136 0.66 0.497215
Target:  5'- --gGCCGCCGCGCgUC-UGag-UCGCu -3'
miRNA:   3'- cugCGGUGGCGCGgGGuACgaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 48680 0.66 0.497215
Target:  5'- cGGCGCCAagcgcaucgcUCGCGCCuuCCcgGCggUgGCg -3'
miRNA:   3'- -CUGCGGU----------GGCGCGG--GGuaCGaaAgCG- -5'
11521 5' -58.4 NC_003085.1 + 5635 0.66 0.487021
Target:  5'- cGugGCgCACCGUcgcggcgccagGCCCUuUGCgcgcacUUCGCg -3'
miRNA:   3'- -CugCG-GUGGCG-----------CGGGGuACGa-----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 48454 0.66 0.487021
Target:  5'- cGGCGCUgcucGCCGCGCUCaggaGCg--CGCg -3'
miRNA:   3'- -CUGCGG----UGGCGCGGGgua-CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 12157 0.66 0.476927
Target:  5'- cGCGUCACC-CGCCCCGUaGaCgagaaUCGCc -3'
miRNA:   3'- cUGCGGUGGcGCGGGGUA-C-Gaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 620 0.66 0.476927
Target:  5'- cGACgGCCACCcCGCCCUG-GCUgccgaacgUCGUc -3'
miRNA:   3'- -CUG-CGGUGGcGCGGGGUaCGAa-------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 47336 0.66 0.476927
Target:  5'- cGCGCCGCCcuUGCCcauCCAUGCg--UGCg -3'
miRNA:   3'- cUGCGGUGGc-GCGG---GGUACGaaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.