miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 40636 0.66 0.528343
Target:  5'- uGGgGuCCACCGCgGCCgucaCCGUGCcgUCGUu -3'
miRNA:   3'- -CUgC-GGUGGCG-CGG----GGUACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 40136 0.66 0.497215
Target:  5'- --gGCCGCCGCGCgUC-UGag-UCGCu -3'
miRNA:   3'- cugCGGUGGCGCGgGGuACgaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 39509 0.66 0.497215
Target:  5'- --aGCCGgUGCGCCUCGUcGCUggcaUCGUc -3'
miRNA:   3'- cugCGGUgGCGCGGGGUA-CGAa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 38834 0.67 0.437641
Target:  5'- gGGCGCacuGCCGCGUcguCCCAcUGCgacggCGCg -3'
miRNA:   3'- -CUGCGg--UGGCGCG---GGGU-ACGaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 38311 0.66 0.476927
Target:  5'- gGugGCCACCGC-CgaCGUGCUgccgUCGa -3'
miRNA:   3'- -CugCGGUGGCGcGggGUACGAa---AGCg -5'
11521 5' -58.4 NC_003085.1 + 38006 0.68 0.39126
Target:  5'- gGACGCucaCACCGCgucgGCCCCAacgGCgacCGCu -3'
miRNA:   3'- -CUGCG---GUGGCG----CGGGGUa--CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 37238 0.71 0.25264
Target:  5'- --aGCCGCCGCGCUCaagGCaggcgUCGCa -3'
miRNA:   3'- cugCGGUGGCGCGGGguaCGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 37035 0.66 0.507504
Target:  5'- cGGCGCCAacauggccCCGCGgCCC-UGCcugUCGa -3'
miRNA:   3'- -CUGCGGU--------GGCGCgGGGuACGaa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 34780 0.68 0.409428
Target:  5'- cGCGCCGCCGUGgC-CAUGCaaccggCGCc -3'
miRNA:   3'- cUGCGGUGGCGCgGgGUACGaaa---GCG- -5'
11521 5' -58.4 NC_003085.1 + 34643 0.7 0.307883
Target:  5'- cGugGCCAUgGCGUCCCcuugauaAUGCUUgucauacaagCGCu -3'
miRNA:   3'- -CugCGGUGgCGCGGGG-------UACGAAa---------GCG- -5'
11521 5' -58.4 NC_003085.1 + 34552 0.73 0.179733
Target:  5'- aGCGCCACCaGCcgGCCCgCGUGCgc-CGCa -3'
miRNA:   3'- cUGCGGUGG-CG--CGGG-GUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 34507 0.71 0.272598
Target:  5'- cGACGUCGCCG-GCUCCGaGUUUUgGCu -3'
miRNA:   3'- -CUGCGGUGGCgCGGGGUaCGAAAgCG- -5'
11521 5' -58.4 NC_003085.1 + 34162 0.69 0.340009
Target:  5'- uGACGCCACCGaaccCGCCUCAUcgGCgg-CGg -3'
miRNA:   3'- -CUGCGGUGGC----GCGGGGUA--CGaaaGCg -5'
11521 5' -58.4 NC_003085.1 + 32315 0.76 0.119302
Target:  5'- aGCGCCGCUggugagcacgcgGCGCCCCGUGCUcugggcggugUUGCg -3'
miRNA:   3'- cUGCGGUGG------------CGCGGGGUACGAa---------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 32223 0.74 0.165348
Target:  5'- cGACGCCguaacccACCGCGCCaCCAgccGCccccgUCGCa -3'
miRNA:   3'- -CUGCGG-------UGGCGCGG-GGUa--CGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 30788 0.69 0.348204
Target:  5'- gGACGCCGguCCGCuucCCCCuUGCgccgcUUCGCc -3'
miRNA:   3'- -CUGCGGU--GGCGc--GGGGuACGa----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 30421 0.72 0.222067
Target:  5'- aGACGCCGCaguGCGCCCCGcgacaGCgucCGCc -3'
miRNA:   3'- -CUGCGGUGg--CGCGGGGUa----CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 30255 0.68 0.409427
Target:  5'- cGGCGCCcagcccCCGcCGCCCCAgGCggaCGUg -3'
miRNA:   3'- -CUGCGGu-----GGC-GCGGGGUaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 30126 0.71 0.259155
Target:  5'- gGACGCCAuCCGCcgccgGCCCCAgcaGCccaCGCa -3'
miRNA:   3'- -CUGCGGU-GGCG-----CGGGGUa--CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 29750 0.73 0.189593
Target:  5'- cGugGCCGCCgucGCGCCCCAccucGUg--CGCa -3'
miRNA:   3'- -CugCGGUGG---CGCGGGGUa---CGaaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.