miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 42818 0.68 0.382375
Target:  5'- gGAUGCCguccACCGCGCCCgCAUcGCcccgaCGCc -3'
miRNA:   3'- -CUGCGG----UGGCGCGGG-GUA-CGaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 18076 0.68 0.400278
Target:  5'- gGGCGCCAguCCGCGCUcucgcagcuCCGUGCcc-UGCg -3'
miRNA:   3'- -CUGCGGU--GGCGCGG---------GGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 38311 0.66 0.476927
Target:  5'- gGugGCCACCGC-CgaCGUGCUgccgUCGa -3'
miRNA:   3'- -CugCGGUGGCGcGggGUACGAa---AGCg -5'
11521 5' -58.4 NC_003085.1 + 37035 0.66 0.507504
Target:  5'- cGGCGCCAacauggccCCGCGgCCC-UGCcugUCGa -3'
miRNA:   3'- -CUGCGGU--------GGCGCgGGGuACGaa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 14307 0.7 0.308639
Target:  5'- aGGgGCUguaACCGgGCCCC-UGCUUcCGCu -3'
miRNA:   3'- -CUgCGG---UGGCgCGGGGuACGAAaGCG- -5'
11521 5' -58.4 NC_003085.1 + 42895 0.68 0.373626
Target:  5'- cGCGCCGCCaGCGCcggaCCCGUGCa----- -3'
miRNA:   3'- cUGCGGUGG-CGCG----GGGUACGaaagcg -5'
11521 5' -58.4 NC_003085.1 + 34780 0.68 0.409428
Target:  5'- cGCGCCGCCGUGgC-CAUGCaaccggCGCc -3'
miRNA:   3'- cUGCGGUGGCGCgGgGUACGaaa---GCG- -5'
11521 5' -58.4 NC_003085.1 + 20610 0.66 0.528343
Target:  5'- aGAgGuuCCACCGCGUCUagcguCAUGCgcggagUCGCg -3'
miRNA:   3'- -CUgC--GGUGGCGCGGG-----GUACGaa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 10614 0.68 0.373626
Target:  5'- -cCGCCACuCGCGCUCCA-GCacUUCGa -3'
miRNA:   3'- cuGCGGUG-GCGCGGGGUaCGa-AAGCg -5'
11521 5' -58.4 NC_003085.1 + 40636 0.66 0.528343
Target:  5'- uGGgGuCCACCGCgGCCgucaCCGUGCcgUCGUu -3'
miRNA:   3'- -CUgC-GGUGGCG-CGG----GGUACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 8600 0.68 0.400278
Target:  5'- uGGCGUCACCgccuucgccuGCGCCCgCugGUGCgcgUCGUa -3'
miRNA:   3'- -CUGCGGUGG----------CGCGGG-G--UACGaa-AGCG- -5'
11521 5' -58.4 NC_003085.1 + 48762 0.68 0.382375
Target:  5'- -cCGCCacGCCGCGCaacggugcgCCCAUGUUcgUCGUc -3'
miRNA:   3'- cuGCGG--UGGCGCG---------GGGUACGAa-AGCG- -5'
11521 5' -58.4 NC_003085.1 + 2434 0.67 0.447291
Target:  5'- cGCGCCgcggccucgcACUGCGCCuCCcgGaugUCGCa -3'
miRNA:   3'- cUGCGG----------UGGCGCGG-GGuaCgaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 26791 0.67 0.466938
Target:  5'- cGGCGCCgcGCCGUcaccGCCCUgcGCg--CGCu -3'
miRNA:   3'- -CUGCGG--UGGCG----CGGGGuaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 5635 0.66 0.487021
Target:  5'- cGugGCgCACCGUcgcggcgccagGCCCUuUGCgcgcacUUCGCg -3'
miRNA:   3'- -CugCG-GUGGCG-----------CGGGGuACGa-----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 48680 0.66 0.497215
Target:  5'- cGGCGCCAagcgcaucgcUCGCGCCuuCCcgGCggUgGCg -3'
miRNA:   3'- -CUGCGGU----------GGCGCGG--GGuaCGaaAgCG- -5'
11521 5' -58.4 NC_003085.1 + 11664 0.71 0.272598
Target:  5'- cGCGCCGCCcUGCCCCGUuccaGCcaggCGCg -3'
miRNA:   3'- cUGCGGUGGcGCGGGGUA----CGaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 47799 0.7 0.293801
Target:  5'- uACGCgCACCGCGCCCguCA-GCaggCGCa -3'
miRNA:   3'- cUGCG-GUGGCGCGGG--GUaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 24554 0.69 0.339197
Target:  5'- gGugGCCACCGcCGCCauguccuCCAccUGCgagCGCc -3'
miRNA:   3'- -CugCGGUGGC-GCGG-------GGU--ACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 30788 0.69 0.348204
Target:  5'- gGACGCCGguCCGCuucCCCCuUGCgccgcUUCGCc -3'
miRNA:   3'- -CUGCGGU--GGCGc--GGGGuACGa----AAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.