miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11522 5' -57 NC_003085.1 + 36972 0.66 0.584716
Target:  5'- -cUGGAGCGuGCUGUUGGCccaGguGCUgCu -3'
miRNA:   3'- auGCCUCGC-UGACGACCG---CguUGAgG- -5'
11522 5' -57 NC_003085.1 + 26394 0.66 0.562861
Target:  5'- cGCuGAGCGcCcaggGCUGGCaGUuGCUCCa -3'
miRNA:   3'- aUGcCUCGCuGa---CGACCG-CGuUGAGG- -5'
11522 5' -57 NC_003085.1 + 45868 0.66 0.562861
Target:  5'- gGCGGAGCcgguggGGCUGuCUgucugccacaGGCGCAGgUUCg -3'
miRNA:   3'- aUGCCUCG------CUGAC-GA----------CCGCGUUgAGG- -5'
11522 5' -57 NC_003085.1 + 7431 0.66 0.552014
Target:  5'- gUACuGGAGCGGC-GCccaggGGCGCGugUagcCCg -3'
miRNA:   3'- -AUG-CCUCGCUGaCGa----CCGCGUugA---GG- -5'
11522 5' -57 NC_003085.1 + 46004 0.66 0.552014
Target:  5'- cGCGGAcccgugGCGACU-CUGGCuGCcuCUCUg -3'
miRNA:   3'- aUGCCU------CGCUGAcGACCG-CGuuGAGG- -5'
11522 5' -57 NC_003085.1 + 36997 0.66 0.552014
Target:  5'- aGCaGGGC-ACUGCUGGCGCc---CCa -3'
miRNA:   3'- aUGcCUCGcUGACGACCGCGuugaGG- -5'
11522 5' -57 NC_003085.1 + 12830 0.66 0.552014
Target:  5'- gGCGGAuGCG-CUGUUGGcCGcCAAUgCCa -3'
miRNA:   3'- aUGCCU-CGCuGACGACC-GC-GUUGaGG- -5'
11522 5' -57 NC_003085.1 + 12090 0.66 0.552014
Target:  5'- cUACGGGGCGGgUGacgcGCGCAAgUCg -3'
miRNA:   3'- -AUGCCUCGCUgACgac-CGCGUUgAGg -5'
11522 5' -57 NC_003085.1 + 32236 0.66 0.550932
Target:  5'- cACGGGGCGccGCgUGCUcaccagcGGCGCugaccaacuCUCCa -3'
miRNA:   3'- aUGCCUCGC--UG-ACGA-------CCGCGuu-------GAGG- -5'
11522 5' -57 NC_003085.1 + 28706 0.66 0.541231
Target:  5'- cGCGGAGCuGCgcGCUGGCccuGC-GCUUCg -3'
miRNA:   3'- aUGCCUCGcUGa-CGACCG---CGuUGAGG- -5'
11522 5' -57 NC_003085.1 + 42124 0.66 0.541231
Target:  5'- gACGGcaAGCGAaUGCacGGCGCGgauGCUCUc -3'
miRNA:   3'- aUGCC--UCGCUgACGa-CCGCGU---UGAGG- -5'
11522 5' -57 NC_003085.1 + 23320 0.66 0.541231
Target:  5'- gUGCGcGGGCGGCgcggUGCgaaGCGCGGCggCCg -3'
miRNA:   3'- -AUGC-CUCGCUG----ACGac-CGCGUUGa-GG- -5'
11522 5' -57 NC_003085.1 + 41500 0.66 0.541231
Target:  5'- gACGGAGagcguauGGCUGUUGcCGCccgaGGCUCCg -3'
miRNA:   3'- aUGCCUCg------CUGACGACcGCG----UUGAGG- -5'
11522 5' -57 NC_003085.1 + 41556 0.67 0.530519
Target:  5'- -cCGGuAGCaGC-GCUGGCGCGguACUUCa -3'
miRNA:   3'- auGCC-UCGcUGaCGACCGCGU--UGAGG- -5'
11522 5' -57 NC_003085.1 + 48830 0.67 0.530519
Target:  5'- cACGGGGCaACUccGCgUGGCGCcuGACgcgCCg -3'
miRNA:   3'- aUGCCUCGcUGA--CG-ACCGCG--UUGa--GG- -5'
11522 5' -57 NC_003085.1 + 22909 0.67 0.530519
Target:  5'- gGCGGAG--GCUGCcGGgGCGAagccCUCCg -3'
miRNA:   3'- aUGCCUCgcUGACGaCCgCGUU----GAGG- -5'
11522 5' -57 NC_003085.1 + 32928 0.67 0.530519
Target:  5'- aUGCGGcacGGCGACcgGCUcaacaGGCGCGcCUgCCa -3'
miRNA:   3'- -AUGCC---UCGCUGa-CGA-----CCGCGUuGA-GG- -5'
11522 5' -57 NC_003085.1 + 22207 0.67 0.530519
Target:  5'- gUGCaGGGCGAcCUGCU-GCGCA--UCCa -3'
miRNA:   3'- -AUGcCUCGCU-GACGAcCGCGUugAGG- -5'
11522 5' -57 NC_003085.1 + 22890 0.67 0.519886
Target:  5'- --aGGAGC-----CUGGUGCGACUCCg -3'
miRNA:   3'- augCCUCGcugacGACCGCGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 45153 0.67 0.509337
Target:  5'- --aGGuGCaGC-GCUGGCGCuacguGCUCCu -3'
miRNA:   3'- augCCuCGcUGaCGACCGCGu----UGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.