miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11532 3' -62 NC_003085.1 + 48921 0.66 0.379019
Target:  5'- --cGUCGCGGCCUacgGCGGguuguGCUgCGCCa -3'
miRNA:   3'- uccCGGCGCCGGAg--CGCC-----UGAaGUGG- -5'
11532 3' -62 NC_003085.1 + 32847 0.66 0.379019
Target:  5'- gAGaGGCCGCGcGCCgCG-GGAC--CGCCc -3'
miRNA:   3'- -UC-CCGGCGC-CGGaGCgCCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 14497 0.66 0.379019
Target:  5'- gAGGGCCaGC--CCUCGCGGAgCaUCuCCa -3'
miRNA:   3'- -UCCCGG-CGccGGAGCGCCU-GaAGuGG- -5'
11532 3' -62 NC_003085.1 + 9140 0.66 0.379019
Target:  5'- uGGGa-GCGGCacCUgGCGGAgcUCGCCg -3'
miRNA:   3'- uCCCggCGCCG--GAgCGCCUgaAGUGG- -5'
11532 3' -62 NC_003085.1 + 48857 0.66 0.379019
Target:  5'- --cGCCGUaGGCCgCGaCGGGCUugcagUCGCCg -3'
miRNA:   3'- uccCGGCG-CCGGaGC-GCCUGA-----AGUGG- -5'
11532 3' -62 NC_003085.1 + 8554 0.66 0.370585
Target:  5'- cGGGCCaGC-GCCUCGgCGGcCUUCugGCg -3'
miRNA:   3'- uCCCGG-CGcCGGAGC-GCCuGAAG--UGg -5'
11532 3' -62 NC_003085.1 + 38197 0.66 0.370585
Target:  5'- cAGGGCgGCGaGCCUCaCGG----CACCu -3'
miRNA:   3'- -UCCCGgCGC-CGGAGcGCCugaaGUGG- -5'
11532 3' -62 NC_003085.1 + 27601 0.66 0.370585
Target:  5'- -cGGCCaccuuCGGCCUgCGCGGugUguggaGCCu -3'
miRNA:   3'- ucCCGGc----GCCGGA-GCGCCugAag---UGG- -5'
11532 3' -62 NC_003085.1 + 31795 0.66 0.370585
Target:  5'- aAGcGGCC-CGGCCgcucgCGaCGGACa-CACCc -3'
miRNA:   3'- -UC-CCGGcGCCGGa----GC-GCCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 48520 0.66 0.369749
Target:  5'- aGGuGGCCuaugcucGCGGCCUCGCcguccaugcggaGGAagccagCGCCg -3'
miRNA:   3'- -UC-CCGG-------CGCCGGAGCG------------CCUgaa---GUGG- -5'
11532 3' -62 NC_003085.1 + 620 0.66 0.36228
Target:  5'- uGGGCgCGCucgaGGCUggCGCGGACcUCGUCg -3'
miRNA:   3'- uCCCG-GCG----CCGGa-GCGCCUGaAGUGG- -5'
11532 3' -62 NC_003085.1 + 20015 0.66 0.36228
Target:  5'- uGGGGCCGCaacucaGCCUgGaGGACggcaUUGCCg -3'
miRNA:   3'- -UCCCGGCGc-----CGGAgCgCCUGa---AGUGG- -5'
11532 3' -62 NC_003085.1 + 10670 0.66 0.36228
Target:  5'- cGGGGCUGcCGGCg-UGCuGGACa-CACCa -3'
miRNA:   3'- -UCCCGGC-GCCGgaGCG-CCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 374 0.66 0.354105
Target:  5'- gGGGGCaGCGGa--CGgGGACUcggcggUCACCu -3'
miRNA:   3'- -UCCCGgCGCCggaGCgCCUGA------AGUGG- -5'
11532 3' -62 NC_003085.1 + 12035 0.66 0.351679
Target:  5'- cGGuGCUGCGcgacuucgugcgccGCUUCGCGGGCU--ACCc -3'
miRNA:   3'- uCC-CGGCGC--------------CGGAGCGCCUGAagUGG- -5'
11532 3' -62 NC_003085.1 + 40994 0.66 0.346062
Target:  5'- aAGGGCUggcccaGCGGCgUCGUcaucgccguGGGCgUCGCUg -3'
miRNA:   3'- -UCCCGG------CGCCGgAGCG---------CCUGaAGUGG- -5'
11532 3' -62 NC_003085.1 + 30206 0.66 0.346062
Target:  5'- uGGGCUGCuggGGCCggcgGCGGAUggCGuCCg -3'
miRNA:   3'- uCCCGGCG---CCGGag--CGCCUGaaGU-GG- -5'
11532 3' -62 NC_003085.1 + 39996 0.66 0.346062
Target:  5'- -uGGUagugcacgaCGCGGCCgaCGCuGGGCUUCugCa -3'
miRNA:   3'- ucCCG---------GCGCCGGa-GCG-CCUGAAGugG- -5'
11532 3' -62 NC_003085.1 + 2205 0.66 0.346062
Target:  5'- gGGGGCCGCcGuCCUCggacguguacuuGUGGGCgccgauggCGCCg -3'
miRNA:   3'- -UCCCGGCGcC-GGAG------------CGCCUGaa------GUGG- -5'
11532 3' -62 NC_003085.1 + 40663 0.66 0.33815
Target:  5'- --cGCCGCGcaaCCUCGCGGAgc-CGCCg -3'
miRNA:   3'- uccCGGCGCc--GGAGCGCCUgaaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.