miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11541 3' -61 NC_003085.1 + 37324 0.66 0.429354
Target:  5'- aCGUgUGGuCUGCGACGccuGCCUugaGCGCg -3'
miRNA:   3'- cGCAgGCCcGACGCUGUu--CGGG---CGCG- -5'
11541 3' -61 NC_003085.1 + 30216 0.66 0.429354
Target:  5'- aCGUCCugcguGGGCUGCug-GGGCCgGCGg -3'
miRNA:   3'- cGCAGG-----CCCGACGcugUUCGGgCGCg -5'
11541 3' -61 NC_003085.1 + 11636 0.66 0.429354
Target:  5'- cGCGggcaggaCGGuGCguugGCG-CAGGCCCcgGCGCu -3'
miRNA:   3'- -CGCag-----GCC-CGa---CGCuGUUCGGG--CGCG- -5'
11541 3' -61 NC_003085.1 + 5847 0.66 0.429354
Target:  5'- -gGUCCGGGaCUGgGAC-GGCaCCGUc- -3'
miRNA:   3'- cgCAGGCCC-GACgCUGuUCG-GGCGcg -5'
11541 3' -61 NC_003085.1 + 44313 0.66 0.429354
Target:  5'- cGCGa--GGuGUUGCGACAuggauGCCUGgGCg -3'
miRNA:   3'- -CGCaggCC-CGACGCUGUu----CGGGCgCG- -5'
11541 3' -61 NC_003085.1 + 18035 0.66 0.426588
Target:  5'- cGCGcugCCGGcGCUucagGUGGCcccagcagagcccaGAGCgCCGCGCu -3'
miRNA:   3'- -CGCa--GGCC-CGA----CGCUG--------------UUCG-GGCGCG- -5'
11541 3' -61 NC_003085.1 + 2348 0.66 0.420175
Target:  5'- uGCGacaUCCGGGagGCGcaguGCGAGgCCGCGg -3'
miRNA:   3'- -CGC---AGGCCCgaCGC----UGUUCgGGCGCg -5'
11541 3' -61 NC_003085.1 + 18291 0.66 0.420175
Target:  5'- aGCcaCCGGGCgGUG-CAcGCCCcgGCGCu -3'
miRNA:   3'- -CGcaGGCCCGaCGCuGUuCGGG--CGCG- -5'
11541 3' -61 NC_003085.1 + 7357 0.66 0.417444
Target:  5'- cGCGcccCUGGGCgccGCuccaguacgaggccGACGGcGCCCGCGUg -3'
miRNA:   3'- -CGCa--GGCCCGa--CG--------------CUGUU-CGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 2165 0.66 0.411115
Target:  5'- gGCG-CCGaGGUgcgGCGGCugcGCUCGuCGCg -3'
miRNA:   3'- -CGCaGGC-CCGa--CGCUGuu-CGGGC-GCG- -5'
11541 3' -61 NC_003085.1 + 25949 0.66 0.411115
Target:  5'- cGCGUCCGGcacgGCGGCGAguuGCUCGaCGg -3'
miRNA:   3'- -CGCAGGCCcga-CGCUGUU---CGGGC-GCg -5'
11541 3' -61 NC_003085.1 + 11624 0.66 0.411115
Target:  5'- uGUG-CagGGGCUGCuACcAGCgCGCGCg -3'
miRNA:   3'- -CGCaGg-CCCGACGcUGuUCGgGCGCG- -5'
11541 3' -61 NC_003085.1 + 30393 0.66 0.411115
Target:  5'- gGUGcCUGGGCUggagaaacagGCGGCAcuGGCgaGCGCc -3'
miRNA:   3'- -CGCaGGCCCGA----------CGCUGU--UCGggCGCG- -5'
11541 3' -61 NC_003085.1 + 34528 0.66 0.411115
Target:  5'- aGCGUCagcaacacaGcGGCcGCGAgCGccaccagccGGCCCGCGUg -3'
miRNA:   3'- -CGCAGg--------C-CCGaCGCU-GU---------UCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 44370 0.66 0.405737
Target:  5'- cGCGUCaacgucacugucgcuCGGGCUGUucGuCAu-CCCGCGCc -3'
miRNA:   3'- -CGCAG---------------GCCCGACG--CuGUucGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 5643 0.66 0.402177
Target:  5'- gGCGUagaCGuGGCgcaccgucgcgGCGcCAGGCCCuuuGCGCg -3'
miRNA:   3'- -CGCAg--GC-CCGa----------CGCuGUUCGGG---CGCG- -5'
11541 3' -61 NC_003085.1 + 9657 0.66 0.402177
Target:  5'- gGCGgagagacgCCGGuGCUcggcgGCGGCAGGCCaaaCGcCGCu -3'
miRNA:   3'- -CGCa-------GGCC-CGA-----CGCUGUUCGG---GC-GCG- -5'
11541 3' -61 NC_003085.1 + 25349 0.66 0.402177
Target:  5'- cGCGgugagguagaCGGGCgcgccGaCGACGAcGCCCGcCGCg -3'
miRNA:   3'- -CGCag--------GCCCGa----C-GCUGUU-CGGGC-GCG- -5'
11541 3' -61 NC_003085.1 + 21342 0.66 0.393364
Target:  5'- -aGUCUGGGC-GCGGCAccaccuuGUCCGuCGUc -3'
miRNA:   3'- cgCAGGCCCGaCGCUGUu------CGGGC-GCG- -5'
11541 3' -61 NC_003085.1 + 4943 0.66 0.393364
Target:  5'- uCGUCCGGcggguGCUG-GGCAccaCCGCGCa -3'
miRNA:   3'- cGCAGGCC-----CGACgCUGUucgGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.