miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11548 5' -61.6 NC_003085.1 + 41920 0.66 0.412021
Target:  5'- gAGGUGGaccaGCgCCGGGCgggacucauggggcgCUuggGCGGCGCCg -3'
miRNA:   3'- -UCUACUg---CGaGGCCCG---------------GG---CGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 12410 0.66 0.412021
Target:  5'- -uGUGGCGCgugcccuugcccaggUUCGGGUCgGUGuGCGCCg -3'
miRNA:   3'- ucUACUGCG---------------AGGCCCGGgCGC-UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 42819 0.66 0.408448
Target:  5'- uGGAUGcCGUccaCCGcGCCCGCaucgccccGACGCCc -3'
miRNA:   3'- -UCUACuGCGa--GGCcCGGGCG--------CUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 34756 0.66 0.408448
Target:  5'- gAGGUGACGgguguucccaCUUCGGGUUCGgcaGGCGCa -3'
miRNA:   3'- -UCUACUGC----------GAGGCCCGGGCg--CUGCGg -5'
11548 5' -61.6 NC_003085.1 + 39278 0.66 0.408448
Target:  5'- gAGggGGucCGUaCCGGaGCCUGCGuuGCCg -3'
miRNA:   3'- -UCuaCU--GCGaGGCC-CGGGCGCugCGG- -5'
11548 5' -61.6 NC_003085.1 + 43541 0.66 0.40048
Target:  5'- aAGgcGGCGCgUCCagcuugcgcgagauaGGCCCGCGucaccgacccgGCGCCa -3'
miRNA:   3'- -UCuaCUGCG-AGGc--------------CCGGGCGC-----------UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 43731 0.66 0.397846
Target:  5'- ---cGACGCgggacacccgagCCGGGUCCGCcccgguggugGGCGCg -3'
miRNA:   3'- ucuaCUGCGa-----------GGCCCGGGCG----------CUGCGg -5'
11548 5' -61.6 NC_003085.1 + 20715 0.66 0.39697
Target:  5'- ---cGACGCgagccacgucaucgUCCGcGUCCGCGaaGCGCCg -3'
miRNA:   3'- ucuaCUGCG--------------AGGCcCGGGCGC--UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 9662 0.66 0.390877
Target:  5'- cGGAUGGCGgagagacgCCGGuGCUCGgCGGCGgCa -3'
miRNA:   3'- -UCUACUGCga------GGCC-CGGGC-GCUGCgG- -5'
11548 5' -61.6 NC_003085.1 + 12819 0.66 0.388284
Target:  5'- --cUGACGgUCCGGGCggaugcgcuguuggCCGCcaAUGCCa -3'
miRNA:   3'- ucuACUGCgAGGCCCG--------------GGCGc-UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 18054 0.66 0.382279
Target:  5'- ------aGCUCCGugcccugcGGCCCGCGcUGCCg -3'
miRNA:   3'- ucuacugCGAGGC--------CCGGGCGCuGCGG- -5'
11548 5' -61.6 NC_003085.1 + 14375 0.66 0.382279
Target:  5'- --cUGGCGaCUCUuacugaGGGCUgCGCGGCGCUu -3'
miRNA:   3'- ucuACUGC-GAGG------CCCGG-GCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 22012 0.66 0.373807
Target:  5'- cAGAUGcucaaauggaGCGuCUCU-GGCCUGCGugGCa -3'
miRNA:   3'- -UCUAC----------UGC-GAGGcCCGGGCGCugCGg -5'
11548 5' -61.6 NC_003085.1 + 6096 0.66 0.373807
Target:  5'- --cUGGCGCggcgUCCGGGCguacauCCGCGcccaGCCg -3'
miRNA:   3'- ucuACUGCG----AGGCCCG------GGCGCug--CGG- -5'
11548 5' -61.6 NC_003085.1 + 32903 0.66 0.373807
Target:  5'- ---cGGC-CUCuCGGGCCCcaaucagucGCGACaGCCg -3'
miRNA:   3'- ucuaCUGcGAG-GCCCGGG---------CGCUG-CGG- -5'
11548 5' -61.6 NC_003085.1 + 43029 0.66 0.373807
Target:  5'- cGGAUGAUGCgggaaCCGaGGCgCacaGCaACGCCg -3'
miRNA:   3'- -UCUACUGCGa----GGC-CCG-Gg--CGcUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 34550 0.66 0.365464
Target:  5'- cGA--GCGCcaccagCC-GGCCCGCGuGCGCCg -3'
miRNA:   3'- uCUacUGCGa-----GGcCCGGGCGC-UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 16569 0.66 0.365464
Target:  5'- -cGUGGCGC-CCGGccaCUGCGACGaCCc -3'
miRNA:   3'- ucUACUGCGaGGCCcg-GGCGCUGC-GG- -5'
11548 5' -61.6 NC_003085.1 + 28970 0.66 0.365464
Target:  5'- uGGuUGAUGCUCUGcugagacGCCUGCGACuGCUg -3'
miRNA:   3'- -UCuACUGCGAGGCc------CGGGCGCUG-CGG- -5'
11548 5' -61.6 NC_003085.1 + 42812 0.67 0.35725
Target:  5'- -uGUGAUGUcuugcacgggUCCGGcGCUgGCGGCGCg -3'
miRNA:   3'- ucUACUGCG----------AGGCC-CGGgCGCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.