miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11559 3' -59.3 NC_003085.1 + 36834 0.66 0.454105
Target:  5'- uACGCcGAcGGCgaGGCCg--GCGGCCGa -3'
miRNA:   3'- -UGCGuCUaCCGg-UCGGacaUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 29458 0.66 0.454105
Target:  5'- gGCGCAGcaacuccgccAUGGCguucuGCCgg-GCGGCCAu -3'
miRNA:   3'- -UGCGUC----------UACCGgu---CGGacaUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 48986 0.66 0.454105
Target:  5'- cGCGCuGAUGGCCGucgugcGCUccuUGU-UGGCCGg -3'
miRNA:   3'- -UGCGuCUACCGGU------CGG---ACAuGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 21037 0.66 0.45214
Target:  5'- uUGCGGAaGGCCAGCCaccgcaccuCGuGCCAg -3'
miRNA:   3'- uGCGUCUaCCGGUCGGacau-----GC-CGGU- -5'
11559 3' -59.3 NC_003085.1 + 42029 0.66 0.444326
Target:  5'- aGCGCAGGUGcGUCucgguggcGGCaaGUGgGGCCAu -3'
miRNA:   3'- -UGCGUCUAC-CGG--------UCGgaCAUgCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 35973 0.66 0.444326
Target:  5'- cGCGUAGggGGCCAgGCCg--ACGcCCAg -3'
miRNA:   3'- -UGCGUCuaCCGGU-CGGacaUGCcGGU- -5'
11559 3' -59.3 NC_003085.1 + 48190 0.66 0.434666
Target:  5'- cGCGCAcgaGGUGGCCcacCUUGgauuCGGCCAc -3'
miRNA:   3'- -UGCGU---CUACCGGuc-GGACau--GCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 30029 0.66 0.433706
Target:  5'- uGC-CGGAgGGCUgcuggagGGCCUGUGCcauGGCCAu -3'
miRNA:   3'- -UGcGUCUaCCGG-------UCGGACAUG---CCGGU- -5'
11559 3' -59.3 NC_003085.1 + 35981 0.66 0.414782
Target:  5'- uGCGCGGcUGGCCguggcauGGcCCUGggacuccGCGGCCc -3'
miRNA:   3'- -UGCGUCuACCGG-------UC-GGACa------UGCCGGu -5'
11559 3' -59.3 NC_003085.1 + 641 0.66 0.406434
Target:  5'- -gGCGGG-GGCCGcCCUGcacuucgACGGCCAc -3'
miRNA:   3'- ugCGUCUaCCGGUcGGACa------UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 41425 0.67 0.388264
Target:  5'- gACGCGGcccGGCCuGCC-GUAgaaGGCCAa -3'
miRNA:   3'- -UGCGUCua-CCGGuCGGaCAUg--CCGGU- -5'
11559 3' -59.3 NC_003085.1 + 4331 0.67 0.379382
Target:  5'- uACGCAGuaccUGGaCCGGCagcacacgGUgaGCGGCCAg -3'
miRNA:   3'- -UGCGUCu---ACC-GGUCGga------CA--UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 8569 0.67 0.379382
Target:  5'- uGCGCgucguacuGGcgGGCCAgcGCCUcgGCGGCCu -3'
miRNA:   3'- -UGCG--------UCuaCCGGU--CGGAcaUGCCGGu -5'
11559 3' -59.3 NC_003085.1 + 40925 0.67 0.375867
Target:  5'- cACGCuGGccuccagguUGGCCAGCCcggccgccgucagGUACaGGCCGg -3'
miRNA:   3'- -UGCGuCU---------ACCGGUCGGa------------CAUG-CCGGU- -5'
11559 3' -59.3 NC_003085.1 + 8940 0.67 0.370636
Target:  5'- gUGCAGcgcGUGGCCAaCCUGcGCugGGCCAa -3'
miRNA:   3'- uGCGUC---UACCGGUcGGACaUG--CCGGU- -5'
11559 3' -59.3 NC_003085.1 + 31416 0.67 0.353563
Target:  5'- gGCGCGGGcgggacGGCCGGCCUGggACGucuGCUg -3'
miRNA:   3'- -UGCGUCUa-----CCGGUCGGACa-UGC---CGGu -5'
11559 3' -59.3 NC_003085.1 + 23035 0.67 0.353563
Target:  5'- -gGCAGAcugGGCCGGCUcGUcCGGCUu -3'
miRNA:   3'- ugCGUCUa--CCGGUCGGaCAuGCCGGu -5'
11559 3' -59.3 NC_003085.1 + 18554 0.68 0.337053
Target:  5'- cACG-AGGUGGCgGGCaaggACGGCCAa -3'
miRNA:   3'- -UGCgUCUACCGgUCGgacaUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 41472 0.68 0.337053
Target:  5'- gGCGCGGGUGaaguaccgcGCCAGCgCUGccuacCGGCCc -3'
miRNA:   3'- -UGCGUCUAC---------CGGUCG-GACau---GCCGGu -5'
11559 3' -59.3 NC_003085.1 + 23688 0.68 0.329011
Target:  5'- cACGCAGcgGGCCcgcgcagcAGCCUccuccGUcaagACGGCCc -3'
miRNA:   3'- -UGCGUCuaCCGG--------UCGGA-----CA----UGCCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.