miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11559 5' -58.9 NC_003085.1 + 18078 0.66 0.545976
Target:  5'- -uUGGGCGcCAGUCcGCGCUcUCGCa- -3'
miRNA:   3'- ccACUCGCaGUCGGcCGCGA-AGCGcc -5'
11559 5' -58.9 NC_003085.1 + 41709 0.66 0.53869
Target:  5'- aGGUGAGCGgCGGCCaagccugGGCcauguucgaggagaaGCg-CGCGGa -3'
miRNA:   3'- -CCACUCGCaGUCGG-------CCG---------------CGaaGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 20255 0.66 0.535577
Target:  5'- aGGUGGcGCaGUC-GCUGGUGCcUCcgGCGGa -3'
miRNA:   3'- -CCACU-CG-CAGuCGGCCGCGaAG--CGCC- -5'
11559 5' -58.9 NC_003085.1 + 15335 0.66 0.535577
Target:  5'- gGGUGAGC-UCGGCCGcG-GCcUC-CGGg -3'
miRNA:   3'- -CCACUCGcAGUCGGC-CgCGaAGcGCC- -5'
11559 5' -58.9 NC_003085.1 + 25260 0.66 0.501794
Target:  5'- cGGcGGGCGUCGucGUCGGCGCgcccgucuaccucacCGCGa -3'
miRNA:   3'- -CCaCUCGCAGU--CGGCCGCGaa-------------GCGCc -5'
11559 5' -58.9 NC_003085.1 + 18049 0.66 0.494746
Target:  5'- cGUGcccuGCGgcccgcgCuGCCGGCGCUUCagGUGGc -3'
miRNA:   3'- cCACu---CGCa------GuCGGCCGCGAAG--CGCC- -5'
11559 5' -58.9 NC_003085.1 + 10843 0.67 0.484756
Target:  5'- aGGUGgcaugcccccAGCGUCuucCCGGCGCccgUGUGGc -3'
miRNA:   3'- -CCAC----------UCGCAGuc-GGCCGCGaa-GCGCC- -5'
11559 5' -58.9 NC_003085.1 + 23884 0.67 0.484756
Target:  5'- cGUGAGCGaacggcagCAGCCGuccacGCGCagaaagUCGCGa -3'
miRNA:   3'- cCACUCGCa-------GUCGGC-----CGCGa-----AGCGCc -5'
11559 5' -58.9 NC_003085.1 + 10262 0.67 0.478809
Target:  5'- gGGUGAGCaggucgcgcauugCAGCCGGgucCGCccgguccUCGCGGu -3'
miRNA:   3'- -CCACUCGca-----------GUCGGCC---GCGa------AGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 16421 0.67 0.474864
Target:  5'- cGGUGcccuuGuCGUCGGCCagagacaGCGCUUCGCc- -3'
miRNA:   3'- -CCACu----C-GCAGUCGGc------CGCGAAGCGcc -5'
11559 5' -58.9 NC_003085.1 + 31874 0.67 0.474864
Target:  5'- gGGUGuguccgucGCGagCGGCCGGgcCGCUUCGCc- -3'
miRNA:   3'- -CCACu-------CGCa-GUCGGCC--GCGAAGCGcc -5'
11559 5' -58.9 NC_003085.1 + 35905 0.67 0.474864
Target:  5'- --cGAGCGcCuggcGCCGGaGCUUCuGCGGc -3'
miRNA:   3'- ccaCUCGCaGu---CGGCCgCGAAG-CGCC- -5'
11559 5' -58.9 NC_003085.1 + 7464 0.67 0.465074
Target:  5'- cGGUGGGCGUCGcGCCucaCGCUggaggUGaCGGg -3'
miRNA:   3'- -CCACUCGCAGU-CGGcc-GCGAa----GC-GCC- -5'
11559 5' -58.9 NC_003085.1 + 22522 0.67 0.45539
Target:  5'- cGGUGuAGaCG--GGCUGGCGCUccUCGaCGGa -3'
miRNA:   3'- -CCAC-UC-GCagUCGGCCGCGA--AGC-GCC- -5'
11559 5' -58.9 NC_003085.1 + 35759 0.67 0.436356
Target:  5'- -cUGAGCaaCuGgUGGUGCUUCGCGGc -3'
miRNA:   3'- ccACUCGcaGuCgGCCGCGAAGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 40355 0.67 0.436356
Target:  5'- cGGUGGGCa--AGCCGcUGCUgccCGCGGc -3'
miRNA:   3'- -CCACUCGcagUCGGCcGCGAa--GCGCC- -5'
11559 5' -58.9 NC_003085.1 + 9753 0.67 0.436356
Target:  5'- --aGGGaCGcCAGCCGGUGCUcgacguUgGCGGc -3'
miRNA:   3'- ccaCUC-GCaGUCGGCCGCGA------AgCGCC- -5'
11559 5' -58.9 NC_003085.1 + 31785 0.68 0.427011
Target:  5'- cGGuUGGGCGaagCGGcCCGGCcGC-UCGCGa -3'
miRNA:   3'- -CC-ACUCGCa--GUC-GGCCG-CGaAGCGCc -5'
11559 5' -58.9 NC_003085.1 + 31433 0.68 0.427011
Target:  5'- gGGUcGAGCuUCuuGUCGGCGCgg-GCGGg -3'
miRNA:   3'- -CCA-CUCGcAGu-CGGCCGCGaagCGCC- -5'
11559 5' -58.9 NC_003085.1 + 47741 0.68 0.412311
Target:  5'- cGGUGcGCGUagcgucgcaauucgaCGGCCaGGCGC-UCGCaGGc -3'
miRNA:   3'- -CCACuCGCA---------------GUCGG-CCGCGaAGCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.