miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 3' -54.6 NC_003085.1 + 27935 0.66 0.77384
Target:  5'- cCCGggguACGUCGGca-CCGuCACGAggAGUGCg -3'
miRNA:   3'- -GGC----UGUAGCCuucGGC-GUGCU--UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 3179 0.66 0.743101
Target:  5'- gUCGAgCAUCGccucAAGCCGCGCcuuccgcgGGAGCGg -3'
miRNA:   3'- -GGCU-GUAGCc---UUCGGCGUG--------CUUCGCg -5'
11561 3' -54.6 NC_003085.1 + 33912 0.67 0.72203
Target:  5'- aCGugGgcCGGuGGCCGgGCGGAGaGCg -3'
miRNA:   3'- gGCugUa-GCCuUCGGCgUGCUUCgCG- -5'
11561 3' -54.6 NC_003085.1 + 14543 0.79 0.146262
Target:  5'- gUCGACGUCGGGAGggaauUC-CGCGAAGCGCu -3'
miRNA:   3'- -GGCUGUAGCCUUC-----GGcGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 38087 0.66 0.77384
Target:  5'- gUCGcCGUUGG-GGCCGaCGCGGugugAGCGUc -3'
miRNA:   3'- -GGCuGUAGCCuUCGGC-GUGCU----UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 25842 0.66 0.763725
Target:  5'- cCUGcACGUCGGAcuuGCC-CGCGAGGaauGCc -3'
miRNA:   3'- -GGC-UGUAGCCUu--CGGcGUGCUUCg--CG- -5'
11561 3' -54.6 NC_003085.1 + 45868 0.66 0.763725
Target:  5'- gCGAgGUUGGAGGCagGgACGgcGCGg -3'
miRNA:   3'- gGCUgUAGCCUUCGg-CgUGCuuCGCg -5'
11561 3' -54.6 NC_003085.1 + 10781 0.66 0.753475
Target:  5'- gCCGuCAgccagugccUCGcGGGCCGCGCGcAGgGCu -3'
miRNA:   3'- -GGCuGU---------AGCcUUCGGCGUGCuUCgCG- -5'
11561 3' -54.6 NC_003085.1 + 41222 0.66 0.75141
Target:  5'- -aGcCGUUGGAGGCauccggccagcaGUACGggGUGCc -3'
miRNA:   3'- ggCuGUAGCCUUCGg-----------CGUGCuuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 43219 0.66 0.743101
Target:  5'- gCCGAg--CGGGAaCCGCGCagcauGGGCGCg -3'
miRNA:   3'- -GGCUguaGCCUUcGGCGUGc----UUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 17053 0.66 0.743101
Target:  5'- gUCGGCGUCGcGGGCC---CGGAGCGUc -3'
miRNA:   3'- -GGCUGUAGCcUUCGGcguGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 47469 0.66 0.753475
Target:  5'- -gGuCAUCcaGGAGGCCgaGCGCGAAG-GCu -3'
miRNA:   3'- ggCuGUAG--CCUUCGG--CGUGCUUCgCG- -5'
11561 3' -54.6 NC_003085.1 + 6808 0.66 0.77384
Target:  5'- gCCGGgcaGUCGGAccaucggucaucGGCgGCAUGGgugcGGUGCa -3'
miRNA:   3'- -GGCUg--UAGCCU------------UCGgCGUGCU----UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 38598 0.66 0.743101
Target:  5'- gCCGGgGUUGGu-GUugCGCAUGAAuGCGCu -3'
miRNA:   3'- -GGCUgUAGCCuuCG--GCGUGCUU-CGCG- -5'
11561 3' -54.6 NC_003085.1 + 22899 0.66 0.77384
Target:  5'- gCCGACGuggcaaUCGGAgucggGGCCGUcgccuccuggGCGgGAGCGg -3'
miRNA:   3'- -GGCUGU------AGCCU-----UCGGCG----------UGC-UUCGCg -5'
11561 3' -54.6 NC_003085.1 + 44817 0.66 0.753475
Target:  5'- aCCGAagcgagcgCGGAacucGGCUucccguGCACGAAGaCGCg -3'
miRNA:   3'- -GGCUgua-----GCCU----UCGG------CGUGCUUC-GCG- -5'
11561 3' -54.6 NC_003085.1 + 39979 0.66 0.743101
Target:  5'- gCCGACGcUGGGcuuCUGCAUGggGUGUc -3'
miRNA:   3'- -GGCUGUaGCCUuc-GGCGUGCuuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 25438 0.67 0.72203
Target:  5'- cCCGcCGUCGGcguGcCCGuCACcguccgGAAGCGCg -3'
miRNA:   3'- -GGCuGUAGCCuu-C-GGC-GUG------CUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 3945 0.66 0.77384
Target:  5'- gCGACAgacggCGGGcgcGCCGU-CGAcGCGCc -3'
miRNA:   3'- gGCUGUa----GCCUu--CGGCGuGCUuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 26915 0.66 0.763725
Target:  5'- aUCGAgGguggCGGggGCa-CACGccuGGCGCg -3'
miRNA:   3'- -GGCUgUa---GCCuuCGgcGUGCu--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.