miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 5' -57.6 NC_003085.1 + 43108 0.66 0.525751
Target:  5'- -aGCGGGCCGcucgacACGGCCcgGuuGGUa- -3'
miRNA:   3'- uaCGUCCGGU------UGCCGGaaCggCUAcg -5'
11561 5' -57.6 NC_003085.1 + 23340 0.66 0.524682
Target:  5'- -gGCcGGCCAAgcgccgcCGGCC--GCCGAgGCg -3'
miRNA:   3'- uaCGuCCGGUU-------GCCGGaaCGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 19926 0.66 0.524682
Target:  5'- -aGCAGGCCGaaguagugcgacaGCGGUUc-GCCGuuguUGCg -3'
miRNA:   3'- uaCGUCCGGU-------------UGCCGGaaCGGCu---ACG- -5'
11561 5' -57.6 NC_003085.1 + 31414 0.66 0.521478
Target:  5'- -cGCGGGCgGgACGGCCggccugggacgucUGCUGAgGCu -3'
miRNA:   3'- uaCGUCCGgU-UGCCGGa------------ACGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 28928 0.66 0.521478
Target:  5'- -cGCAGGCCAACcGCCcaacaucaacacGCCGuggGCc -3'
miRNA:   3'- uaCGUCCGGUUGcCGGaa----------CGGCua-CG- -5'
11561 5' -57.6 NC_003085.1 + 29017 0.66 0.515095
Target:  5'- -gGgAGGCCcACGGCg-UGuuGAUGUu -3'
miRNA:   3'- uaCgUCCGGuUGCCGgaACggCUACG- -5'
11561 5' -57.6 NC_003085.1 + 17322 0.66 0.515095
Target:  5'- -aGCAGGU--ACaGCCgUGCgCGGUGCg -3'
miRNA:   3'- uaCGUCCGguUGcCGGaACG-GCUACG- -5'
11561 5' -57.6 NC_003085.1 + 14994 0.66 0.515095
Target:  5'- uUGgAGcGCC-ACGcGCUggcgGCCGGUGCg -3'
miRNA:   3'- uACgUC-CGGuUGC-CGGaa--CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 11139 0.66 0.515095
Target:  5'- gGUGCAGGCCGA-GGU--UGgUGGUGUa -3'
miRNA:   3'- -UACGUCCGGUUgCCGgaACgGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 2794 0.66 0.515095
Target:  5'- -gGCGGGgccuucuucgcCCGACuGGaCCUUuCCGAUGCg -3'
miRNA:   3'- uaCGUCC-----------GGUUG-CC-GGAAcGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 12802 0.66 0.515095
Target:  5'- -gGCAGGUgcuccacgcccUGACGGuCCggGCgGAUGCg -3'
miRNA:   3'- uaCGUCCG-----------GUUGCC-GGaaCGgCUACG- -5'
11561 5' -57.6 NC_003085.1 + 29427 0.66 0.511915
Target:  5'- -gGC-GGCCAuguccugguugaagACGGCCUgccCCGcgGCg -3'
miRNA:   3'- uaCGuCCGGU--------------UGCCGGAac-GGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 39910 0.66 0.504527
Target:  5'- cAUGCAGaaGCCAGCgucGGCCgcGUCG-UGCa -3'
miRNA:   3'- -UACGUC--CGGUUG---CCGGaaCGGCuACG- -5'
11561 5' -57.6 NC_003085.1 + 46756 0.66 0.504527
Target:  5'- -aGCAGGCagCGGCGGCgCUccagGCgGcgGCg -3'
miRNA:   3'- uaCGUCCG--GUUGCCG-GAa---CGgCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 30225 0.66 0.494054
Target:  5'- cAUGCAaauGGCCcuggcGCaGGCCUUGCgCGgcGCc -3'
miRNA:   3'- -UACGU---CCGGu----UG-CCGGAACG-GCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 28581 0.66 0.494054
Target:  5'- aGUGCAGGCgCAcaugGCGGUggacacGCCGGUGg -3'
miRNA:   3'- -UACGUCCG-GU----UGCCGgaa---CGGCUACg -5'
11561 5' -57.6 NC_003085.1 + 22186 0.66 0.494054
Target:  5'- cUGCGGcGCCGggcucugcuggGCGGCC-UGCUucUGCg -3'
miRNA:   3'- uACGUC-CGGU-----------UGCCGGaACGGcuACG- -5'
11561 5' -57.6 NC_003085.1 + 43707 0.66 0.494054
Target:  5'- cUGgAGGCgGAUGGCCUcccgUGCCcgcucUGCa -3'
miRNA:   3'- uACgUCCGgUUGCCGGA----ACGGcu---ACG- -5'
11561 5' -57.6 NC_003085.1 + 31696 0.66 0.483681
Target:  5'- --uCAGGCaCGACuucaGGCCccgcgGCCGGUGCc -3'
miRNA:   3'- uacGUCCG-GUUG----CCGGaa---CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 33309 0.66 0.481619
Target:  5'- cUGcCGGGCuCAACGGCUcauggagcccgGCCGAgUGCc -3'
miRNA:   3'- uAC-GUCCG-GUUGCCGGaa---------CGGCU-ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.