miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11562 3' -64 NC_003085.1 + 31620 0.66 0.304641
Target:  5'- cCGGCCGCgGgGCcugaagUCGUGCCugaGCCc -3'
miRNA:   3'- uGCCGGCGgCgCGa-----AGCGUGGcg-CGG- -5'
11562 3' -64 NC_003085.1 + 2373 0.66 0.304641
Target:  5'- -aGGCCGCgGCGCgcgagcucUCGCAgguacuCCcuuugggguucgGCGCCu -3'
miRNA:   3'- ugCCGGCGgCGCGa-------AGCGU------GG------------CGCGG- -5'
11562 3' -64 NC_003085.1 + 32113 0.66 0.304641
Target:  5'- -aGGCCacucGCCGCccccauCACCGCGCCg -3'
miRNA:   3'- ugCCGG----CGGCGcgaagcGUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 46807 0.66 0.304641
Target:  5'- gGCGGCUggcaGCgCGCGCgaagGCGCUGC-CCa -3'
miRNA:   3'- -UGCCGG----CG-GCGCGaag-CGUGGCGcGG- -5'
11562 3' -64 NC_003085.1 + 881 0.66 0.304641
Target:  5'- uGCGGCgGCaCGCGgacgUC-CACCGUgGCCu -3'
miRNA:   3'- -UGCCGgCG-GCGCga--AGcGUGGCG-CGG- -5'
11562 3' -64 NC_003085.1 + 22993 0.66 0.304641
Target:  5'- cGCGGCCuCggaGgGCUUCGCcCCGgcaGCCu -3'
miRNA:   3'- -UGCCGGcGg--CgCGAAGCGuGGCg--CGG- -5'
11562 3' -64 NC_003085.1 + 16464 0.66 0.300363
Target:  5'- gACGGCaguguccgaccugcgCGCCGC-CUucccgUCGCugACgGCGCCg -3'
miRNA:   3'- -UGCCG---------------GCGGCGcGA-----AGCG--UGgCGCGG- -5'
11562 3' -64 NC_003085.1 + 21595 0.66 0.297537
Target:  5'- cAUGGCCGacaucaUGCGUggCGCGagcgacCCGCGCg -3'
miRNA:   3'- -UGCCGGCg-----GCGCGaaGCGU------GGCGCGg -5'
11562 3' -64 NC_003085.1 + 37230 0.66 0.297537
Target:  5'- gGCGGCCcagccGCCGCGCUcaagGCAg-GCGUCg -3'
miRNA:   3'- -UGCCGG-----CGGCGCGAag--CGUggCGCGG- -5'
11562 3' -64 NC_003085.1 + 26169 0.66 0.296132
Target:  5'- -aGGCaGCCGUGUcccaggccaugCGuCACCGUGCCu -3'
miRNA:   3'- ugCCGgCGGCGCGaa---------GC-GUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 46153 0.66 0.295431
Target:  5'- aGCGGCuCGCCGUcgguaagcgcgacGCguacgugaaagCGUAUCGCGCg -3'
miRNA:   3'- -UGCCG-GCGGCG-------------CGaa---------GCGUGGCGCGg -5'
11562 3' -64 NC_003085.1 + 25471 0.66 0.293337
Target:  5'- uCGGCCGCCGCuCUUCuuCACCcagggagaaucccauGCGUg -3'
miRNA:   3'- uGCCGGCGGCGcGAAGc-GUGG---------------CGCGg -5'
11562 3' -64 NC_003085.1 + 7983 0.66 0.290562
Target:  5'- cAC-GCCGacaggaCGCGC-UCGCcCCGaCGCCa -3'
miRNA:   3'- -UGcCGGCg-----GCGCGaAGCGuGGC-GCGG- -5'
11562 3' -64 NC_003085.1 + 24707 0.66 0.290562
Target:  5'- gACGGCgGCaucgGCgGCUUCGCGg-GUGCCa -3'
miRNA:   3'- -UGCCGgCGg---CG-CGAAGCGUggCGCGG- -5'
11562 3' -64 NC_003085.1 + 45208 0.66 0.290562
Target:  5'- gACGGaCGUCGUGUuucUUCGCcCaCGCGUCg -3'
miRNA:   3'- -UGCCgGCGGCGCG---AAGCGuG-GCGCGG- -5'
11562 3' -64 NC_003085.1 + 32958 0.66 0.290562
Target:  5'- gACGGCC-CCGaUGCUccaccaaUGCGCUGgGCCu -3'
miRNA:   3'- -UGCCGGcGGC-GCGAa------GCGUGGCgCGG- -5'
11562 3' -64 NC_003085.1 + 41850 0.66 0.290562
Target:  5'- ---cCCGCCcgGCGCUgguccaccUCGCGgUGCGCCg -3'
miRNA:   3'- ugccGGCGG--CGCGA--------AGCGUgGCGCGG- -5'
11562 3' -64 NC_003085.1 + 9285 0.66 0.289872
Target:  5'- cGCGGCuuccCGCgGCGaacacagggCGCAggaguacCCGCGCCg -3'
miRNA:   3'- -UGCCG----GCGgCGCgaa------GCGU-------GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 40626 0.66 0.288495
Target:  5'- cGCGGCCGucaCCGUGCcgucgUUGUuggggacaguggugACUGUGCCa -3'
miRNA:   3'- -UGCCGGC---GGCGCGa----AGCG--------------UGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 3646 0.66 0.283716
Target:  5'- uCGGCagcgaGgCGCGCUUgCGC-CCG-GCCg -3'
miRNA:   3'- uGCCGg----CgGCGCGAA-GCGuGGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.