miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 3' -65.3 NC_003085.1 + 23303 0.66 0.267934
Target:  5'- uGCgAAGCGCgG-CGGCCGUCuGGaGCa -3'
miRNA:   3'- cCGgUUCGCGgCgGCCGGCGGcUC-CG- -5'
11563 3' -65.3 NC_003085.1 + 44180 0.66 0.267934
Target:  5'- aGGCgGaagaGGCauuCCGUCGGCUGgCCGcGGCg -3'
miRNA:   3'- -CCGgU----UCGc--GGCGGCCGGC-GGCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 49019 0.66 0.267934
Target:  5'- gGGCCGGaccggaugcGCGCUGCCcucgcggagauuGGCgaacgGCgCGAGGCg -3'
miRNA:   3'- -CCGGUU---------CGCGGCGG------------CCGg----CG-GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 29308 0.66 0.267934
Target:  5'- cGGCCAuggccAGCGCUaUUGGacagggcaCCGCCGcgGGGCa -3'
miRNA:   3'- -CCGGU-----UCGCGGcGGCC--------GGCGGC--UCCG- -5'
11563 3' -65.3 NC_003085.1 + 45919 0.66 0.261574
Target:  5'- cGCCuggacguGCGCCGCgacUGGCUGgCCGAGa- -3'
miRNA:   3'- cCGGuu-----CGCGGCG---GCCGGC-GGCUCcg -5'
11563 3' -65.3 NC_003085.1 + 23855 0.66 0.261574
Target:  5'- cGGCCGGaCGaauuCGCCcauGCCGCuuCGAGGCu -3'
miRNA:   3'- -CCGGUUcGCg---GCGGc--CGGCG--GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 31674 0.66 0.261574
Target:  5'- cGGCC-GGUGCCuCCuggGGCUGCacaacaacggaUGAGGCa -3'
miRNA:   3'- -CCGGuUCGCGGcGG---CCGGCG-----------GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 31298 0.66 0.261574
Target:  5'- cGCuCAGGCGacaCGCCGa-UGuCCGAGGCg -3'
miRNA:   3'- cCG-GUUCGCg--GCGGCcgGC-GGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 22123 0.66 0.261573
Target:  5'- aGCCcGGCGCCgcagcaGCCGGaCCcaaagguggugGCCcAGGCg -3'
miRNA:   3'- cCGGuUCGCGG------CGGCC-GG-----------CGGcUCCG- -5'
11563 3' -65.3 NC_003085.1 + 9567 0.66 0.261573
Target:  5'- cGGCguuuGGC-CUGCC-GCCGCCGAgcaccGGCg -3'
miRNA:   3'- -CCGgu--UCGcGGCGGcCGGCGGCU-----CCG- -5'
11563 3' -65.3 NC_003085.1 + 23732 0.66 0.261573
Target:  5'- cGGCCcccaccguGGCGCCGaaGGacaCGUCggugaGAGGCa -3'
miRNA:   3'- -CCGGu-------UCGCGGCggCCg--GCGG-----CUCCG- -5'
11563 3' -65.3 NC_003085.1 + 12620 0.66 0.25969
Target:  5'- cGGCCAgcGGCGCggguggcaucccucUGCCgcgauuucuGGCgGUgGAGGCu -3'
miRNA:   3'- -CCGGU--UCGCG--------------GCGG---------CCGgCGgCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 22761 0.66 0.255336
Target:  5'- cGCCGA-CGaCGCCcGCCGCgGuGGCg -3'
miRNA:   3'- cCGGUUcGCgGCGGcCGGCGgCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 34072 0.66 0.255336
Target:  5'- uGGCUcuGUuCCGCC-GCCGauGAGGCg -3'
miRNA:   3'- -CCGGuuCGcGGCGGcCGGCggCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 5854 0.66 0.255336
Target:  5'- aGGCCAcGGCGUagaGCaCGcGCCGCUcaaGGGGg -3'
miRNA:   3'- -CCGGU-UCGCGg--CG-GC-CGGCGG---CUCCg -5'
11563 3' -65.3 NC_003085.1 + 39609 0.66 0.255336
Target:  5'- cGCgGAGCGCaccgaGCagguGGCCGCaggaGuGGCg -3'
miRNA:   3'- cCGgUUCGCGg----CGg---CCGGCGg---CuCCG- -5'
11563 3' -65.3 NC_003085.1 + 45022 0.66 0.255336
Target:  5'- gGGCCAacgaGGCGUuugaGcCCGGCUGCauCGGcGGCg -3'
miRNA:   3'- -CCGGU----UCGCGg---C-GGCCGGCG--GCU-CCG- -5'
11563 3' -65.3 NC_003085.1 + 46934 0.66 0.255336
Target:  5'- aGGUUcGGCGCgCGCaggGGCCGaCGcGGGCa -3'
miRNA:   3'- -CCGGuUCGCG-GCGg--CCGGCgGC-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 26211 0.66 0.252876
Target:  5'- uGGCCAgcAGC-CCGaguuccaCGGCCGCgucguugaugaugGAGGCa -3'
miRNA:   3'- -CCGGU--UCGcGGCg------GCCGGCGg------------CUCCG- -5'
11563 3' -65.3 NC_003085.1 + 7295 0.66 0.251653
Target:  5'- cGCCAAGCucgacgggaagucuCCGaCGGCCaucGCgGAGGCg -3'
miRNA:   3'- cCGGUUCGc-------------GGCgGCCGG---CGgCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.