miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 5' -52.8 NC_003085.1 + 11695 0.66 0.84882
Target:  5'- cGCGCUgguagCaGCCCCuGCaCAGCcCCUUCg -3'
miRNA:   3'- -CGUGAa----GcUGGGGuUG-GUUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 18026 0.66 0.84882
Target:  5'- gGCGCUUCagguGGCCCCAGCagAGC-CCagagcgCCg -3'
miRNA:   3'- -CGUGAAG----CUGGGGUUGg-UUGaGGa-----GG- -5'
11563 5' -52.8 NC_003085.1 + 23298 0.66 0.84882
Target:  5'- aGCGCggCGGCcgucuggagcagCCCGGCC-ACUgCCUUCa -3'
miRNA:   3'- -CGUGaaGCUG------------GGGUUGGuUGA-GGAGG- -5'
11563 5' -52.8 NC_003085.1 + 43970 0.66 0.84882
Target:  5'- uCACggccCGGCCCCAcGCC-GCguuguccgCCUCCa -3'
miRNA:   3'- cGUGaa--GCUGGGGU-UGGuUGa-------GGAGG- -5'
11563 5' -52.8 NC_003085.1 + 5021 0.66 0.840017
Target:  5'- uGCGCggUgGugCCCAGCacccgccggaCGACUCUUUCg -3'
miRNA:   3'- -CGUGa-AgCugGGGUUG----------GUUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 44315 0.66 0.840017
Target:  5'- aGCGCgacgCGG-CCCGGCaggaAGCggCCUCCa -3'
miRNA:   3'- -CGUGaa--GCUgGGGUUGg---UUGa-GGAGG- -5'
11563 5' -52.8 NC_003085.1 + 48458 0.66 0.840017
Target:  5'- aGCAUaggCcACCUCAGCCuuggcguGCUCCUCg -3'
miRNA:   3'- -CGUGaa-GcUGGGGUUGGu------UGAGGAGg -5'
11563 5' -52.8 NC_003085.1 + 41589 0.66 0.830989
Target:  5'- aGCACgaaCGgcucaaGCCCCAGuuCCGcgcGCUUCUCCu -3'
miRNA:   3'- -CGUGaa-GC------UGGGGUU--GGU---UGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 16940 0.66 0.830989
Target:  5'- gGCAa---GGCCCCGcacACCugggaaGGCUCUUCCa -3'
miRNA:   3'- -CGUgaagCUGGGGU---UGG------UUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 6407 0.66 0.830989
Target:  5'- gGCAC-UCGGCa--GGCCAugguuucCUCCUCCu -3'
miRNA:   3'- -CGUGaAGCUGgggUUGGUu------GAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 41132 0.66 0.821745
Target:  5'- aGCGCggC-ACCCCGuacugcugGCCGGaugCCUCCa -3'
miRNA:   3'- -CGUGaaGcUGGGGU--------UGGUUga-GGAGG- -5'
11563 5' -52.8 NC_003085.1 + 40395 0.66 0.821745
Target:  5'- gGCGCU--GGCCggCAuCCAACUCCUCa -3'
miRNA:   3'- -CGUGAagCUGGg-GUuGGUUGAGGAGg -5'
11563 5' -52.8 NC_003085.1 + 23833 0.66 0.821744
Target:  5'- cCGCUUCGaggcuGCCUCucACCGACgugUCCUUCg -3'
miRNA:   3'- cGUGAAGC-----UGGGGu-UGGUUG---AGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 25698 0.66 0.821744
Target:  5'- gGCGCc-CGGCCUUcgUCGuCUCCUCCu -3'
miRNA:   3'- -CGUGaaGCUGGGGuuGGUuGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 17744 0.66 0.812294
Target:  5'- cCGCgucgUCGGUCUCAgcGCCAGCgCCUCCc -3'
miRNA:   3'- cGUGa---AGCUGGGGU--UGGUUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 45708 0.66 0.812294
Target:  5'- aGCACUgcguaGACgCCGcucACCAAgUCCUgCg -3'
miRNA:   3'- -CGUGAag---CUGgGGU---UGGUUgAGGAgG- -5'
11563 5' -52.8 NC_003085.1 + 16581 0.67 0.802648
Target:  5'- cCACUgcgaCGACCCgGGCU-ACUUCUUCg -3'
miRNA:   3'- cGUGAa---GCUGGGgUUGGuUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 29952 0.67 0.802648
Target:  5'- gGCACa--GGCCCU--CCAGCagcCCUCCg -3'
miRNA:   3'- -CGUGaagCUGGGGuuGGUUGa--GGAGG- -5'
11563 5' -52.8 NC_003085.1 + 44261 0.67 0.792818
Target:  5'- cGCGCUcggacUCGGCcugCCUGGCUugUUCCUCCc -3'
miRNA:   3'- -CGUGA-----AGCUG---GGGUUGGuuGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 28112 0.67 0.792817
Target:  5'- gGCGCU-CGGCUCCGACaggagGACgCCgUCCa -3'
miRNA:   3'- -CGUGAaGCUGGGGUUGg----UUGaGG-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.