miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11567 3' -57.2 NC_003085.1 + 23296 0.66 0.571821
Target:  5'- -cGCGGCGGCcgUCUGgaGCAGccCGg -3'
miRNA:   3'- caUGCCGCCGuaGGACggCGUCuuGU- -5'
11567 3' -57.2 NC_003085.1 + 24707 0.66 0.571821
Target:  5'- -gACGGCGGCAUCggcgGCuuCGCGGGugccaACAc -3'
miRNA:   3'- caUGCCGCCGUAGga--CG--GCGUCU-----UGU- -5'
11567 3' -57.2 NC_003085.1 + 27402 0.66 0.571821
Target:  5'- -cGCGcGUGGUA-CCUGCcCGCGGGcGCAa -3'
miRNA:   3'- caUGC-CGCCGUaGGACG-GCGUCU-UGU- -5'
11567 3' -57.2 NC_003085.1 + 28438 0.66 0.560919
Target:  5'- aGUACGGUccgcgccacGGCGg--UGCCGCGGAugGc -3'
miRNA:   3'- -CAUGCCG---------CCGUaggACGGCGUCUugU- -5'
11567 3' -57.2 NC_003085.1 + 27101 0.66 0.560919
Target:  5'- -aAUGGCaGCGUCgaGCgCGCAGGcACAc -3'
miRNA:   3'- caUGCCGcCGUAGgaCG-GCGUCU-UGU- -5'
11567 3' -57.2 NC_003085.1 + 18812 0.66 0.550075
Target:  5'- -gGCGGCuucGGCAUgCUGC-GCAGGAa- -3'
miRNA:   3'- caUGCCG---CCGUAgGACGgCGUCUUgu -5'
11567 3' -57.2 NC_003085.1 + 30648 0.66 0.550075
Target:  5'- cUACcGUGGCgaGUCgCUGCgGCAGGGCGc -3'
miRNA:   3'- cAUGcCGCCG--UAG-GACGgCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 43993 0.66 0.539297
Target:  5'- -gGCGGCGGcCAUCCgGuuGgCGG-ACAu -3'
miRNA:   3'- caUGCCGCC-GUAGGaCggC-GUCuUGU- -5'
11567 3' -57.2 NC_003085.1 + 20059 0.66 0.539297
Target:  5'- -gACGGCGGCAgg--GCCGUacuuggccaGGAACu -3'
miRNA:   3'- caUGCCGCCGUaggaCGGCG---------UCUUGu -5'
11567 3' -57.2 NC_003085.1 + 1083 0.66 0.528591
Target:  5'- -gACGGUGGCugcuaCCUGCCcauccGCGGcAGCGa -3'
miRNA:   3'- caUGCCGCCGua---GGACGG-----CGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 9221 0.66 0.517965
Target:  5'- -cGCGGCGGCGagcUCCgccaggUGCCGCucccAGAGa- -3'
miRNA:   3'- caUGCCGCCGU---AGG------ACGGCG----UCUUgu -5'
11567 3' -57.2 NC_003085.1 + 13160 0.67 0.507425
Target:  5'- -cGCGGCGuGCcaguUCCUGCUGCAa---- -3'
miRNA:   3'- caUGCCGC-CGu---AGGACGGCGUcuugu -5'
11567 3' -57.2 NC_003085.1 + 8044 0.67 0.507425
Target:  5'- -gAUGGCGGa--CCUGCUGCccuguGGGGCAa -3'
miRNA:   3'- caUGCCGCCguaGGACGGCG-----UCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 23411 0.67 0.507425
Target:  5'- cGgcCGGCGGCG-CUUgGCCGgcCAGAGCGg -3'
miRNA:   3'- -CauGCCGCCGUaGGA-CGGC--GUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 20508 0.67 0.496977
Target:  5'- -cGCGGCGGaCAucuccUCCUGCCaGCGuuGGGCc -3'
miRNA:   3'- caUGCCGCC-GU-----AGGACGG-CGU--CUUGu -5'
11567 3' -57.2 NC_003085.1 + 37296 0.67 0.496977
Target:  5'- -cGCGGCGGCugg--GCCGcCAGAAUu -3'
miRNA:   3'- caUGCCGCCGuaggaCGGC-GUCUUGu -5'
11567 3' -57.2 NC_003085.1 + 21395 0.67 0.496977
Target:  5'- -aGCGGacucaccauCGGCcgCCUGCuguccgaggccgCGCAGAACGa -3'
miRNA:   3'- caUGCC---------GCCGuaGGACG------------GCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 12610 0.67 0.486627
Target:  5'- -cGCgGGUGGCAUCCcucUGCCGCGa---- -3'
miRNA:   3'- caUG-CCGCCGUAGG---ACGGCGUcuugu -5'
11567 3' -57.2 NC_003085.1 + 27674 0.67 0.486627
Target:  5'- cUACGGCGGCgacgugcugGUgCUGUCGCGucuGGGCGu -3'
miRNA:   3'- cAUGCCGCCG---------UAgGACGGCGU---CUUGU- -5'
11567 3' -57.2 NC_003085.1 + 9565 0.67 0.486627
Target:  5'- -gACGGCGuuuggCCUGCCGCcgccGAGCAc -3'
miRNA:   3'- caUGCCGCcgua-GGACGGCGu---CUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.