miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11585 5' -65.1 NC_003085.1 + 16703 0.66 0.267885
Target:  5'- cGGgGGCuuGGg-GCUUGCGACGGGu- -3'
miRNA:   3'- -UCgCCGggCCggCGAGCGCUGCCUgu -5'
11585 5' -65.1 NC_003085.1 + 25154 0.66 0.267885
Target:  5'- cGCGGUgUGGCCGgcgaccguggcCUgGUGGCGGugGc -3'
miRNA:   3'- uCGCCGgGCCGGC-----------GAgCGCUGCCugU- -5'
11585 5' -65.1 NC_003085.1 + 40892 0.66 0.267885
Target:  5'- cGGCGGCaugccaCGGuuGUU-GCGGCGGGa- -3'
miRNA:   3'- -UCGCCGg-----GCCggCGAgCGCUGCCUgu -5'
11585 5' -65.1 NC_003085.1 + 31493 0.66 0.267885
Target:  5'- uGCGGCCCGcGCUGCcggCGCuucaGGugGc -3'
miRNA:   3'- uCGCCGGGC-CGGCGa--GCGcug-CCugU- -5'
11585 5' -65.1 NC_003085.1 + 24679 0.66 0.267885
Target:  5'- gAGCGGCaccauguuCCGGUC-CUUGUG-CGGGCGg -3'
miRNA:   3'- -UCGCCG--------GGCCGGcGAGCGCuGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 6442 0.66 0.261505
Target:  5'- -aCGGCCCGGUugguagagguguUGCUgGCGAagaUGGACu -3'
miRNA:   3'- ucGCCGGGCCG------------GCGAgCGCU---GCCUGu -5'
11585 5' -65.1 NC_003085.1 + 23899 0.66 0.261505
Target:  5'- aGGCGGUCCGcGCCcgccugcuucuGCcCGCuAUGGGCAg -3'
miRNA:   3'- -UCGCCGGGC-CGG-----------CGaGCGcUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 9499 0.66 0.255248
Target:  5'- cGCGGUgacgaUGGCgGCgCGCGGCGGGuCAu -3'
miRNA:   3'- uCGCCGg----GCCGgCGaGCGCUGCCU-GU- -5'
11585 5' -65.1 NC_003085.1 + 18791 0.66 0.243104
Target:  5'- aGGCGGCU--GUCGCUgaGCGACGaGACGu -3'
miRNA:   3'- -UCGCCGGgcCGGCGAg-CGCUGC-CUGU- -5'
11585 5' -65.1 NC_003085.1 + 5501 0.66 0.243104
Target:  5'- uGgGGCCgGGCCGUgagggagcaCGUGAacgaGGACAc -3'
miRNA:   3'- uCgCCGGgCCGGCGa--------GCGCUg---CCUGU- -5'
11585 5' -65.1 NC_003085.1 + 13441 0.66 0.241324
Target:  5'- cGGCGuGCCCauGGCCGCcauccgccaagcugUCGCGGagcguuuccUGGGCGu -3'
miRNA:   3'- -UCGC-CGGG--CCGGCG--------------AGCGCU---------GCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 3565 0.66 0.236631
Target:  5'- aGGCGGCCgGGCgGCaagCGCGccucgcugccgagGCGG-CGa -3'
miRNA:   3'- -UCGCCGGgCCGgCGa--GCGC-------------UGCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 45898 0.66 0.236631
Target:  5'- aGGCGcgcuugcGCCCGGCCGCcuugaGCGugGucCAa -3'
miRNA:   3'- -UCGC-------CGGGCCGGCGag---CGCugCcuGU- -5'
11585 5' -65.1 NC_003085.1 + 45233 0.67 0.225793
Target:  5'- uGCGGCCCGGCugaCGCUCaGCGuaacccgccGCGcGuCAg -3'
miRNA:   3'- uCGCCGGGCCG---GCGAG-CGC---------UGC-CuGU- -5'
11585 5' -65.1 NC_003085.1 + 32839 0.67 0.220259
Target:  5'- uGgGGCCCgagaGGCCGCgCGCcGCGGGa- -3'
miRNA:   3'- uCgCCGGG----CCGGCGaGCGcUGCCUgu -5'
11585 5' -65.1 NC_003085.1 + 14915 0.67 0.214841
Target:  5'- cGCGGgCCGGCugguggCGCUCGCGGCc---- -3'
miRNA:   3'- uCGCCgGGCCG------GCGAGCGCUGccugu -5'
11585 5' -65.1 NC_003085.1 + 47479 0.67 0.209538
Target:  5'- aAGUGGaCgGGCUGCUcaugcaCGCGGCGGAa- -3'
miRNA:   3'- -UCGCCgGgCCGGCGA------GCGCUGCCUgu -5'
11585 5' -65.1 NC_003085.1 + 34914 0.67 0.209538
Target:  5'- uGGCGGCCUacgaguggugcaGG-CGCaCGCGGCGGAg- -3'
miRNA:   3'- -UCGCCGGG------------CCgGCGaGCGCUGCCUgu -5'
11585 5' -65.1 NC_003085.1 + 3958 0.67 0.206411
Target:  5'- cGCGGCCCGGggaUggagccagacggccgCGCUUGCGAgCGcGACAc -3'
miRNA:   3'- uCGCCGGGCC---G---------------GCGAGCGCU-GC-CUGU- -5'
11585 5' -65.1 NC_003085.1 + 1944 0.67 0.204349
Target:  5'- cGuCGGUCCcgguGGCCGUaUCGCaguGGCGGACAc -3'
miRNA:   3'- uC-GCCGGG----CCGGCG-AGCG---CUGCCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.