miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 46491 0.66 0.819319
Target:  5'- cUGCGC-GCUcGACGAaaccacCGCGcGCUUgaCGCCg -3'
miRNA:   3'- -ACGUGuUGA-CUGUU------GCGC-CGAA--GCGG- -5'
11600 3' -53 NC_003085.1 + 40688 0.66 0.819319
Target:  5'- gGCGCAGgggGACGACGUccgGGUgcuggacgCGCCg -3'
miRNA:   3'- aCGUGUUga-CUGUUGCG---CCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 10667 0.66 0.819319
Target:  5'- gGCugAGC-GACAGCGCagcgacgagGGCgagCGCa -3'
miRNA:   3'- aCGugUUGaCUGUUGCG---------CCGaa-GCGg -5'
11600 3' -53 NC_003085.1 + 40288 0.66 0.819319
Target:  5'- cGCGCcgacccacaGACUcagGACuGCGCGGCggcgagcucCGCCa -3'
miRNA:   3'- aCGUG---------UUGA---CUGuUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 34341 0.66 0.819319
Target:  5'- cGCACcAC--GCGGCGCGGCgcuccauccgcUCGUCg -3'
miRNA:   3'- aCGUGuUGacUGUUGCGCCGa----------AGCGG- -5'
11600 3' -53 NC_003085.1 + 14870 0.66 0.819319
Target:  5'- cGCGCaAGgUGACgGACGagcaGGUgUUCGCCg -3'
miRNA:   3'- aCGUG-UUgACUG-UUGCg---CCG-AAGCGG- -5'
11600 3' -53 NC_003085.1 + 9024 0.66 0.819319
Target:  5'- cGUAgGGCUgGACGGCGgcaGGCagcgCGCCu -3'
miRNA:   3'- aCGUgUUGA-CUGUUGCg--CCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 480 0.66 0.819319
Target:  5'- cGCACGACggccauCAGCGCGGagaugaaggCGCg -3'
miRNA:   3'- aCGUGUUGacu---GUUGCGCCgaa------GCGg -5'
11600 3' -53 NC_003085.1 + 8024 0.66 0.809719
Target:  5'- cGCGCcAACUcGACGgagaGCGUauGGCUgUUGCCg -3'
miRNA:   3'- aCGUG-UUGA-CUGU----UGCG--CCGA-AGCGG- -5'
11600 3' -53 NC_003085.1 + 11356 0.66 0.809719
Target:  5'- gGCACcuCcgaGACgAugGUGGCggCGCCg -3'
miRNA:   3'- aCGUGuuGa--CUG-UugCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 18772 0.66 0.809719
Target:  5'- cGgGCGAUgGACAAagcgaagGCGGCUgUCGCUg -3'
miRNA:   3'- aCgUGUUGaCUGUUg------CGCCGA-AGCGG- -5'
11600 3' -53 NC_003085.1 + 1328 0.66 0.799923
Target:  5'- gGCACuGC-GAUGGCGCuggaguacggacGGCUUcCGCCu -3'
miRNA:   3'- aCGUGuUGaCUGUUGCG------------CCGAA-GCGG- -5'
11600 3' -53 NC_003085.1 + 8515 0.66 0.799923
Target:  5'- cGCGCAccagcgggcGCaGGCGAagGCGGUgaCGCCa -3'
miRNA:   3'- aCGUGU---------UGaCUGUUg-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 36009 0.66 0.799923
Target:  5'- cGCgACAGCuUGGCggAugGCGGCcaugggcaCGCCg -3'
miRNA:   3'- aCG-UGUUG-ACUG--UugCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 33367 0.66 0.799923
Target:  5'- gGCGgGACaGACAcCGCGcGCUcaGCCa -3'
miRNA:   3'- aCGUgUUGaCUGUuGCGC-CGAagCGG- -5'
11600 3' -53 NC_003085.1 + 13478 0.66 0.789942
Target:  5'- gGCGCGGCUcGACcuggaccucggaGACGUGGCagCGgCg -3'
miRNA:   3'- aCGUGUUGA-CUG------------UUGCGCCGaaGCgG- -5'
11600 3' -53 NC_003085.1 + 39583 0.66 0.789942
Target:  5'- gGCGCcACUGGCAAgcuggagcgcguCGCGGag-CGCa -3'
miRNA:   3'- aCGUGuUGACUGUU------------GCGCCgaaGCGg -5'
11600 3' -53 NC_003085.1 + 23405 0.66 0.789942
Target:  5'- aGCA-GGCUGAgCAGCGagucaugcaGcGCUUCGCCc -3'
miRNA:   3'- aCGUgUUGACU-GUUGCg--------C-CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 2477 0.66 0.789942
Target:  5'- cGCAUaGugUGGCcaucAGCGCGGCgcUUCaGCCg -3'
miRNA:   3'- aCGUG-UugACUG----UUGCGCCG--AAG-CGG- -5'
11600 3' -53 NC_003085.1 + 34517 0.66 0.789942
Target:  5'- cGUGCGGC-GACAGCgucagcaacacaGCGGCcgcgagCGCCa -3'
miRNA:   3'- aCGUGUUGaCUGUUG------------CGCCGaa----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.