miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 40879 0.67 0.737679
Target:  5'- cGCGCucg-GACGACgGCGGCa-UGCCa -3'
miRNA:   3'- aCGUGuugaCUGUUG-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 40688 0.66 0.819319
Target:  5'- gGCGCAGgggGACGACGUccgGGUgcuggacgCGCCg -3'
miRNA:   3'- aCGUGUUga-CUGUUGCG---CCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 40679 0.66 0.789942
Target:  5'- gGUgaGCAACaGGCuGCGCGccacCUUCGCCu -3'
miRNA:   3'- aCG--UGUUGaCUGuUGCGCc---GAAGCGG- -5'
11600 3' -53 NC_003085.1 + 40288 0.66 0.819319
Target:  5'- cGCGCcgacccacaGACUcagGACuGCGCGGCggcgagcucCGCCa -3'
miRNA:   3'- aCGUG---------UUGA---CUGuUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 39642 0.72 0.462491
Target:  5'- gGCGCAACUucgcGACGACaccgaGCGGCgcgCGCg -3'
miRNA:   3'- aCGUGUUGA----CUGUUG-----CGCCGaa-GCGg -5'
11600 3' -53 NC_003085.1 + 39583 0.66 0.789942
Target:  5'- gGCGCcACUGGCAAgcuggagcgcguCGCGGag-CGCa -3'
miRNA:   3'- aCGUGuUGACUGUU------------GCGCCgaaGCGg -5'
11600 3' -53 NC_003085.1 + 38691 1.11 0.000979
Target:  5'- cUGCACAACUGACAACGCGGCUUCGCCc -3'
miRNA:   3'- -ACGUGUUGACUGUUGCGCCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 38269 0.76 0.284514
Target:  5'- cGCGCGACgacgacgGAUGGCGCgagcucgGGCUUUGCCu -3'
miRNA:   3'- aCGUGUUGa------CUGUUGCG-------CCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 38085 0.66 0.779788
Target:  5'- aGCGCuccacccacuuGCUGACggUGUccuGGCUgaCGCCg -3'
miRNA:   3'- aCGUGu----------UGACUGuuGCG---CCGAa-GCGG- -5'
11600 3' -53 NC_003085.1 + 37674 0.74 0.332222
Target:  5'- gGgGCAGCcGACAcgcccggaGCGCGGCgcCGCCg -3'
miRNA:   3'- aCgUGUUGaCUGU--------UGCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 37110 0.73 0.412812
Target:  5'- gGCACAGC-GACAccAUGUGGCgcgUGCCc -3'
miRNA:   3'- aCGUGUUGaCUGU--UGCGCCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 36357 0.66 0.779788
Target:  5'- cGCGCucACgcaccuCAGCGCGGCgu-GCCa -3'
miRNA:   3'- aCGUGu-UGacu---GUUGCGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 36009 0.66 0.799923
Target:  5'- cGCgACAGCuUGGCggAugGCGGCcaugggcaCGCCg -3'
miRNA:   3'- aCG-UGUUG-ACUG--UugCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 35180 0.67 0.726841
Target:  5'- cUGCGCGGCgcuUGACGGCaGCaGCcUgGCCg -3'
miRNA:   3'- -ACGUGUUG---ACUGUUG-CGcCGaAgCGG- -5'
11600 3' -53 NC_003085.1 + 34517 0.66 0.789942
Target:  5'- cGUGCGGC-GACAGCgucagcaacacaGCGGCcgcgagCGCCa -3'
miRNA:   3'- aCGUGUUGaCUGUUG------------CGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 34341 0.66 0.819319
Target:  5'- cGCACcAC--GCGGCGCGGCgcuccauccgcUCGUCg -3'
miRNA:   3'- aCGUGuUGacUGUUGCGCCGa----------AGCGG- -5'
11600 3' -53 NC_003085.1 + 34270 0.68 0.660148
Target:  5'- gGCGCGgcGCUGGCGcAC-CGGCUcaGCCg -3'
miRNA:   3'- aCGUGU--UGACUGU-UGcGCCGAagCGG- -5'
11600 3' -53 NC_003085.1 + 34177 0.67 0.748405
Target:  5'- gGC-CAGCaUGACGcggGCGCGGCgggugagcUCgGCCg -3'
miRNA:   3'- aCGuGUUG-ACUGU---UGCGCCGa-------AG-CGG- -5'
11600 3' -53 NC_003085.1 + 33896 0.67 0.737679
Target:  5'- gGCACGACcagUGuCGucgUGCGcGUUUCGCCg -3'
miRNA:   3'- aCGUGUUG---ACuGUu--GCGC-CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 33557 0.81 0.12507
Target:  5'- cGCACGACgGACcauGCGCGGCgacaugUUGCCg -3'
miRNA:   3'- aCGUGUUGaCUGu--UGCGCCGa-----AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.