Results 21 - 40 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11600 | 3' | -53 | NC_003085.1 | + | 35180 | 0.67 | 0.726841 |
Target: 5'- cUGCGCGGCgcuUGACGGCaGCaGCcUgGCCg -3' miRNA: 3'- -ACGUGUUG---ACUGUUG-CGcCGaAgCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 40879 | 0.67 | 0.737679 |
Target: 5'- cGCGCucg-GACGACgGCGGCa-UGCCa -3' miRNA: 3'- aCGUGuugaCUGUUG-CGCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 26634 | 0.66 | 0.788935 |
Target: 5'- cUGC-CGACgUGGCAAucggaguCGgGGCcgUCGCCu -3' miRNA: 3'- -ACGuGUUG-ACUGUU-------GCgCCGa-AGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 9024 | 0.66 | 0.819319 |
Target: 5'- cGUAgGGCUgGACGGCGgcaGGCagcgCGCCu -3' miRNA: 3'- aCGUgUUGA-CUGUUGCg--CCGaa--GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 26206 | 0.69 | 0.648868 |
Target: 5'- cUGCGCcuuguGCgcgGGCGGCGCGGUgcgaagCGCg -3' miRNA: 3'- -ACGUGu----UGa--CUGUUGCGCCGaa----GCGg -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 27636 | 0.68 | 0.682615 |
Target: 5'- aGCGCGACuUGAUgAGCucgGCGGCcuugggCGCCa -3' miRNA: 3'- aCGUGUUG-ACUG-UUG---CGCCGaa----GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 12501 | 0.67 | 0.748405 |
Target: 5'- gGCGcCAACaUGGCccCGCGGCccUGCCu -3' miRNA: 3'- aCGU-GUUG-ACUGuuGCGCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 34341 | 0.66 | 0.819319 |
Target: 5'- cGCACcAC--GCGGCGCGGCgcuccauccgcUCGUCg -3' miRNA: 3'- aCGUGuUGacUGUUGCGCCGa----------AGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 48995 | 0.68 | 0.693777 |
Target: 5'- gUGgGCAcCUGcaACAGCGcCGGCUggcccuccgCGCCg -3' miRNA: 3'- -ACgUGUuGAC--UGUUGC-GCCGAa--------GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 40288 | 0.66 | 0.819319 |
Target: 5'- cGCGCcgacccacaGACUcagGACuGCGCGGCggcgagcucCGCCa -3' miRNA: 3'- aCGUG---------UUGA---CUGuUGCGCCGaa-------GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 45582 | 0.67 | 0.737679 |
Target: 5'- gUGCcaccGCGACaGACGGCG-GGCg-CGCCg -3' miRNA: 3'- -ACG----UGUUGaCUGUUGCgCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 3081 | 0.67 | 0.726841 |
Target: 5'- cGCACAGCgUGACGAgccgcaggcCGaCGGCggaugaacUUGCCg -3' miRNA: 3'- aCGUGUUG-ACUGUU---------GC-GCCGa-------AGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 2635 | 0.66 | 0.779788 |
Target: 5'- cGuCGCAACUcGGCGGCGaGGUgaUGCCg -3' miRNA: 3'- aC-GUGUUGA-CUGUUGCgCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 36357 | 0.66 | 0.779788 |
Target: 5'- cGCGCucACgcaccuCAGCGCGGCgu-GCCa -3' miRNA: 3'- aCGUGu-UGacu---GUUGCGCCGaagCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 11356 | 0.66 | 0.809719 |
Target: 5'- gGCACcuCcgaGACgAugGUGGCggCGCCg -3' miRNA: 3'- aCGUGuuGa--CUG-UugCGCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 10667 | 0.66 | 0.819319 |
Target: 5'- gGCugAGC-GACAGCGCagcgacgagGGCgagCGCa -3' miRNA: 3'- aCGugUUGaCUGUUGCG---------CCGaa-GCGg -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 409 | 0.69 | 0.614974 |
Target: 5'- --aGCAACUGACgGACGUGGagUUgGCCg -3' miRNA: 3'- acgUGUUGACUG-UUGCGCCg-AAgCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 1644 | 0.69 | 0.648868 |
Target: 5'- gGCACAACc-GCAACGUcugGGCUg-GCCa -3' miRNA: 3'- aCGUGUUGacUGUUGCG---CCGAagCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 8536 | 0.68 | 0.660148 |
Target: 5'- gGCACcuCUcGGC-GCGCGGCgagcUCGUCa -3' miRNA: 3'- aCGUGuuGA-CUGuUGCGCCGa---AGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 3435 | 0.68 | 0.671401 |
Target: 5'- aUGCGCAgagcccACUGACAugcccuGCcCGGCcgUCGUCa -3' miRNA: 3'- -ACGUGU------UGACUGU------UGcGCCGa-AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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