miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 5' -56 NC_003085.1 + 31305 0.66 0.658182
Target:  5'- gGGcAGGCGCgCCCGacaCcGAAGCCuCAGCa -3'
miRNA:   3'- -CC-UCUGUG-GGGUac-GuCUUCGG-GUCG- -5'
11605 5' -56 NC_003085.1 + 10706 0.66 0.658182
Target:  5'- cGGAgGGCACUCCGUGUccguGguGCCUacAGCc -3'
miRNA:   3'- -CCU-CUGUGGGGUACGu---CuuCGGG--UCG- -5'
11605 5' -56 NC_003085.1 + 39766 0.66 0.658182
Target:  5'- --cGGCGCUCCAgucUGCAGGGaCgCCAGCc -3'
miRNA:   3'- ccuCUGUGGGGU---ACGUCUUcG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 16792 0.66 0.647123
Target:  5'- -cAGugGCCauuguuguGUGCGGAGGCCC-GCa -3'
miRNA:   3'- ccUCugUGGgg------UACGUCUUCGGGuCG- -5'
11605 5' -56 NC_003085.1 + 40428 0.66 0.647123
Target:  5'- cGGAGGCGCgCUGccUGCcGccGUCCAGCc -3'
miRNA:   3'- -CCUCUGUGgGGU--ACGuCuuCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 45386 0.66 0.647123
Target:  5'- -cGGGCGCUCCAccaggagGCGGAGcGCCguCAGCg -3'
miRNA:   3'- ccUCUGUGGGGUa------CGUCUU-CGG--GUCG- -5'
11605 5' -56 NC_003085.1 + 2788 0.66 0.647123
Target:  5'- cGGcGGCGCUCCAggcgGCGGcgaagcGCCuCGGCa -3'
miRNA:   3'- -CCuCUGUGGGGUa---CGUCuu----CGG-GUCG- -5'
11605 5' -56 NC_003085.1 + 28032 0.66 0.63605
Target:  5'- uGGAcGGCGuCCUCcUGUcGGAGCCgAGCg -3'
miRNA:   3'- -CCU-CUGU-GGGGuACGuCUUCGGgUCG- -5'
11605 5' -56 NC_003085.1 + 25074 0.66 0.63605
Target:  5'- --cGGCacgGCCCCGUcCAGGccauugauGGCCCGGCc -3'
miRNA:   3'- ccuCUG---UGGGGUAcGUCU--------UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 6161 0.66 0.63605
Target:  5'- cGGGACugguggaCCUGUGCuccauGCCCAGCa -3'
miRNA:   3'- cCUCUGug-----GGGUACGucuu-CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 21354 0.66 0.63605
Target:  5'- uGGAGcGCGCCauccgCGUGguGGgcgucuacgacaAGUCCAGCg -3'
miRNA:   3'- -CCUC-UGUGGg----GUACguCU------------UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 22815 0.66 0.629404
Target:  5'- aGGAGGCgacgGCCCCGacuccgauUGCcacgucggcagcgaaGGAgAGUCCGGCa -3'
miRNA:   3'- -CCUCUG----UGGGGU--------ACG---------------UCU-UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 16941 0.66 0.624974
Target:  5'- cGGugcGGUACUCC-UGCGGAAGCgCCGGUu -3'
miRNA:   3'- -CCu--CUGUGGGGuACGUCUUCG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 12946 0.66 0.624974
Target:  5'- aGGAccguccGCGCCgCGUcCGGAAgGCCCGGCa -3'
miRNA:   3'- -CCUc-----UGUGGgGUAcGUCUU-CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 24593 0.66 0.613903
Target:  5'- -uGGGCGCCgC-UGCAGGugagguugccGGCCCAGg -3'
miRNA:   3'- ccUCUGUGGgGuACGUCU----------UCGGGUCg -5'
11605 5' -56 NC_003085.1 + 11905 0.66 0.613903
Target:  5'- uGGccAGGCGCUCCAcguuUGCcGAAGCCgGGa -3'
miRNA:   3'- -CC--UCUGUGGGGU----ACGuCUUCGGgUCg -5'
11605 5' -56 NC_003085.1 + 26473 0.66 0.613903
Target:  5'- cGGGGaauucgugcuGCACCCCAcGCcGGAGUCUguGGCc -3'
miRNA:   3'- -CCUC----------UGUGGGGUaCGuCUUCGGG--UCG- -5'
11605 5' -56 NC_003085.1 + 558 0.66 0.613903
Target:  5'- cGGGGugGCCgUcgaaGUGCAGGgcgAGCCCccGCc -3'
miRNA:   3'- -CCUCugUGGgG----UACGUCU---UCGGGu-CG- -5'
11605 5' -56 NC_003085.1 + 47164 0.66 0.60285
Target:  5'- aGGcAGGCcaGCgCCGUGCugccGGAGCCC-GCg -3'
miRNA:   3'- -CC-UCUG--UGgGGUACGu---CUUCGGGuCG- -5'
11605 5' -56 NC_003085.1 + 48487 0.66 0.599538
Target:  5'- uGGGACACggcggcguguccugCCCcgGCAGcGGCCUgucuGGCa -3'
miRNA:   3'- cCUCUGUG--------------GGGuaCGUCuUCGGG----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.