miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 3' -49.3 NC_003102.1 + 118973 0.66 0.997958
Target:  5'- aAACUCGGCUGCGGuccGAGUCcuuuGCAUGu -3'
miRNA:   3'- -UUGGGCUGAUGCUu--UUCAGuc--UGUGC- -5'
11651 3' -49.3 NC_003102.1 + 16602 0.66 0.99792
Target:  5'- cGCCgCGACUGCGGAGAaUCgcggcgaucaaccAGACGCc -3'
miRNA:   3'- uUGG-GCUGAUGCUUUUcAG-------------UCUGUGc -5'
11651 3' -49.3 NC_003102.1 + 61755 0.66 0.997557
Target:  5'- -gUCaGACUACGAAaacguucaGAGaUCGGACACGu -3'
miRNA:   3'- uuGGgCUGAUGCUU--------UUC-AGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 31976 0.66 0.997514
Target:  5'- cGAUCUggaaGACUGCGAcgAGAGUCuaguguacguuuuGGACGCGa -3'
miRNA:   3'- -UUGGG----CUGAUGCU--UUUCAG-------------UCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 36641 0.66 0.997093
Target:  5'- cACCCGACaacauuUACaAAGAGUucaaCAGACACa -3'
miRNA:   3'- uUGGGCUG------AUGcUUUUCA----GUCUGUGc -5'
11651 3' -49.3 NC_003102.1 + 58821 0.66 0.997093
Target:  5'- gAugCCGACUGCGAcggcGAcGUCGacgacGACACc -3'
miRNA:   3'- -UugGGCUGAUGCU----UUuCAGU-----CUGUGc -5'
11651 3' -49.3 NC_003102.1 + 120464 0.66 0.997093
Target:  5'- aAACCCGGCUcgaucguuCGggGGGUgUAcGACACGc -3'
miRNA:   3'- -UUGGGCUGAu-------GCuuUUCA-GU-CUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 47263 0.66 0.996558
Target:  5'- -uCCC-ACacGCGAAAuAGUCAGGCGCGu -3'
miRNA:   3'- uuGGGcUGa-UGCUUU-UCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 121806 0.66 0.996558
Target:  5'- --gCCGACUuuuCGAuAAGUCAucGACAUGu -3'
miRNA:   3'- uugGGCUGAu--GCUuUUCAGU--CUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 61651 0.66 0.996558
Target:  5'- aGGCCCaaacGAUgauCGAGuaauugaaacAAGUCAGACGCGu -3'
miRNA:   3'- -UUGGG----CUGau-GCUU----------UUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 96406 0.66 0.996323
Target:  5'- uACCCGAUcaaagugugcaugGCGAuuccAAAGUgAGACGCGu -3'
miRNA:   3'- uUGGGCUGa------------UGCU----UUUCAgUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 7684 0.66 0.995945
Target:  5'- cGCCCGAgaCUugGAAAAGUCuGAa--- -3'
miRNA:   3'- uUGGGCU--GAugCUUUUCAGuCUgugc -5'
11651 3' -49.3 NC_003102.1 + 42934 0.67 0.995245
Target:  5'- ---aUGGCgcaauaacauCGAAAAGUCAGACGCGu -3'
miRNA:   3'- uuggGCUGau--------GCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 121928 0.67 0.995245
Target:  5'- aAACgCGuuUAUGAAAAGUCAaACACGu -3'
miRNA:   3'- -UUGgGCugAUGCUUUUCAGUcUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 114739 0.67 0.99355
Target:  5'- aAACUCGACUA-GAAcauAGUCuGGACACa -3'
miRNA:   3'- -UUGGGCUGAUgCUUu--UCAG-UCUGUGc -5'
11651 3' -49.3 NC_003102.1 + 89401 0.67 0.992537
Target:  5'- uACuuGuuUaaaacAUGAAAAGUCAGACACGu -3'
miRNA:   3'- uUGggCugA-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 113115 0.67 0.991402
Target:  5'- cGACCCGACguggugUACaaGAGAGUCAGAaacguCGCGg -3'
miRNA:   3'- -UUGGGCUG------AUGc-UUUUCAGUCU-----GUGC- -5'
11651 3' -49.3 NC_003102.1 + 103441 0.67 0.991402
Target:  5'- ---aUGGCgcaauaacguCGAAAAGUCAGACACGu -3'
miRNA:   3'- uuggGCUGau--------GCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 89479 0.68 0.988725
Target:  5'- ----aGAC-ACGAAAAGUCAGACAgGu -3'
miRNA:   3'- uugggCUGaUGCUUUUCAGUCUGUgC- -5'
11651 3' -49.3 NC_003102.1 + 132029 0.68 0.983546
Target:  5'- uACCCa---ACGAAAAGUCAGACAa- -3'
miRNA:   3'- uUGGGcugaUGCUUUUCAGUCUGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.