miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 5' -52.1 NC_003102.1 + 104287 0.66 0.969277
Target:  5'- uAACCUGGuuGACUUUUCGauaaGCc---- -3'
miRNA:   3'- -UUGGACCggCUGAAAAGCa---CGacuua -5'
11651 5' -52.1 NC_003102.1 + 133275 0.66 0.96251
Target:  5'- cAACCUGGCCGGCUUUUagauuacGCUu--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAgca----CGAcuua -5'
11651 5' -52.1 NC_003102.1 + 112472 0.67 0.950521
Target:  5'- gAACCUGGCUGACUUUUCa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgacuua -5'
11651 5' -52.1 NC_003102.1 + 137192 0.67 0.946014
Target:  5'- gAACgUGGCCaACUUUUCGUGUa---- -3'
miRNA:   3'- -UUGgACCGGcUGAAAAGCACGacuua -5'
11651 5' -52.1 NC_003102.1 + 56085 0.67 0.946014
Target:  5'- gAACCUGGCCGACUUUUUa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgacuua -5'
11651 5' -52.1 NC_003102.1 + 36230 0.67 0.936211
Target:  5'- gAACgUGGCCGACUUUUCaUGUa---- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGcACGacuua -5'
11651 5' -52.1 NC_003102.1 + 89640 0.67 0.936211
Target:  5'- aAACCUGuCUGACUUUUCGUGUc---- -3'
miRNA:   3'- -UUGGACcGGCUGAAAAGCACGacuua -5'
11651 5' -52.1 NC_003102.1 + 103657 0.67 0.930911
Target:  5'- gAACCUGGCCGACUcUUCauaGaUUGAAa -3'
miRNA:   3'- -UUGGACCGGCUGAaAAGca-C-GACUUa -5'
11651 5' -52.1 NC_003102.1 + 54314 0.68 0.907041
Target:  5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUGUUa--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAA-----------GCACGAcuua -5'
11651 5' -52.1 NC_003102.1 + 26362 0.68 0.900411
Target:  5'- gAACgUGGCCGACUUUUCGaGaaagaUGAc- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCaCg----ACUua -5'
11651 5' -52.1 NC_003102.1 + 54594 0.69 0.878978
Target:  5'- gAACCUGGCCGACUUUUUu--UUGAc- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacGACUua -5'
11651 5' -52.1 NC_003102.1 + 25836 0.69 0.863452
Target:  5'- gAACgUGGCCGACUUUUCGUa------ -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCAcgacuua -5'
11651 5' -52.1 NC_003102.1 + 61601 0.69 0.860233
Target:  5'- gAACCUGGCaGACUUUUCGUaaauuuuauuauaCUGAAUg -3'
miRNA:   3'- -UUGGACCGgCUGAAAAGCAc------------GACUUA- -5'
11651 5' -52.1 NC_003102.1 + 97953 0.7 0.855335
Target:  5'- gAACgUGGCCGACUUUUCGUacaaacccGUcuaUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5'
11651 5' -52.1 NC_003102.1 + 98010 0.7 0.855335
Target:  5'- gAACgUGGCCGACUUUUCGUacaaacccGUcuaUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5'
11651 5' -52.1 NC_003102.1 + 104350 0.7 0.855335
Target:  5'- gAACCUGGCCGACUUUUUaga-UGAc- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgACUua -5'
11651 5' -52.1 NC_003102.1 + 97896 0.7 0.855335
Target:  5'- gAACgUGGCCGACUUUUCGUacaaaccuGUcuaUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5'
11651 5' -52.1 NC_003102.1 + 103539 0.71 0.811526
Target:  5'- aAACCUGGCCGACUUUUUGa------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCacgacuua -5'
11651 5' -52.1 NC_003102.1 + 103598 0.71 0.802181
Target:  5'- gAACCUGGCCGACUUUUUGa------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCacgacuua -5'
11651 5' -52.1 NC_003102.1 + 55993 0.71 0.792663
Target:  5'- gAACCUGGCCGACUUUUCa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgacuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.