Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 5803 | 0.66 | 0.995857 |
Target: 5'- gCcCGCGUGauuCCGGucACGuACGCAGUCg -3' miRNA: 3'- aGuGCGCAUgu-GGCU--UGC-UGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 113223 | 0.67 | 0.992436 |
Target: 5'- gCACGCGUucuugaAUCGAugGAUGCuGUCc -3' miRNA: 3'- aGUGCGCAug----UGGCUugCUGUGuUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 100770 | 0.67 | 0.99345 |
Target: 5'- -aACGCGUugGCUGAGaauaGA-GCGAUCg -3' miRNA: 3'- agUGCGCAugUGGCUUg---CUgUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 636 | 0.67 | 0.995152 |
Target: 5'- gUACGUGgGCACCGAcuCGGCugAAg- -3' miRNA: 3'- aGUGCGCaUGUGGCUu-GCUGugUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 63666 | 0.67 | 0.995152 |
Target: 5'- uUCGCGCcuaGUcccgaacagcaACgACCGcaGACGACGCGAUCc -3' miRNA: 3'- -AGUGCG---CA-----------UG-UGGC--UUGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 106174 | 0.67 | 0.994353 |
Target: 5'- -aACGUGUAUuucguguagccuACCGAACauuCGCAAUCg -3' miRNA: 3'- agUGCGCAUG------------UGGCUUGcu-GUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 52521 | 0.67 | 0.992436 |
Target: 5'- gCACGCGUagACACgGAuuACGAgCGUAAUCa -3' miRNA: 3'- aGUGCGCA--UGUGgCU--UGCU-GUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 120122 | 0.67 | 0.99345 |
Target: 5'- aCACGC----AUCGAGCGAUACAAUg -3' miRNA: 3'- aGUGCGcaugUGGCUUGCUGUGUUAg -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 19357 | 0.67 | 0.992436 |
Target: 5'- gUCGCcGgGUACACaagCGucguccucAACGACGCGAUCa -3' miRNA: 3'- -AGUG-CgCAUGUG---GC--------UUGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 102288 | 0.67 | 0.995077 |
Target: 5'- aUCGCGC-UGCuGCCGAAUucgacgacgaaaaGACACGAUa -3' miRNA: 3'- -AGUGCGcAUG-UGGCUUG-------------CUGUGUUAg -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 95195 | 0.67 | 0.9913 |
Target: 5'- cUugGUGcACGCCGA-CGACGC-GUCu -3' miRNA: 3'- aGugCGCaUGUGGCUuGCUGUGuUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 42056 | 0.67 | 0.992436 |
Target: 5'- cCGCGCu--CACCGAacagccgucgGCGucGCACAAUCu -3' miRNA: 3'- aGUGCGcauGUGGCU----------UGC--UGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 30871 | 0.67 | 0.992436 |
Target: 5'- -gACGCGUuCGCCGAGCuAgGCAAg- -3' miRNA: 3'- agUGCGCAuGUGGCUUGcUgUGUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 117716 | 0.67 | 0.990934 |
Target: 5'- -aACGUcaaGUACaaaACCGAaacgcuuucauugcGCGACGCGAUCa -3' miRNA: 3'- agUGCG---CAUG---UGGCU--------------UGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 131583 | 0.67 | 0.9913 |
Target: 5'- cCACGgGUACGCCcaauuGACGAUcgaacaguACAAUCc -3' miRNA: 3'- aGUGCgCAUGUGGc----UUGCUG--------UGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 32958 | 0.68 | 0.985357 |
Target: 5'- -aGCGcCGUaACGCCGAuauaguACGGCACuuUCa -3' miRNA: 3'- agUGC-GCA-UGUGGCU------UGCUGUGuuAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 100770 | 0.68 | 0.983474 |
Target: 5'- cUACGgGaggACGCgUGAugGGCGCGAUCa -3' miRNA: 3'- aGUGCgCa--UGUG-GCUugCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 41130 | 0.68 | 0.987072 |
Target: 5'- gCACGUuUACuaaaugaCGGAUGGCGCGAUCg -3' miRNA: 3'- aGUGCGcAUGug-----GCUUGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 21333 | 0.68 | 0.985357 |
Target: 5'- -uGCGCGUACGCCu-GCGGCguguccGCGGUUu -3' miRNA: 3'- agUGCGCAUGUGGcuUGCUG------UGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 130138 | 0.68 | 0.983474 |
Target: 5'- gUCAUGCGgcgGCGCCGAAgaaGACAaauuguacaAGUCu -3' miRNA: 3'- -AGUGCGCa--UGUGGCUUg--CUGUg--------UUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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