miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 66062 0.66 0.999534
Target:  5'- gAGAAUCGGAUCaaguacaagGGCUGGCUg---GUa -3'
miRNA:   3'- -UCUUAGCUUGGa--------CCGGCUGAaaaaCA- -5'
11655 3' -47.7 NC_003102.1 + 67169 0.67 0.998654
Target:  5'- cGAuUCGAACgUGuCUGACUUUUUGc -3'
miRNA:   3'- uCUuAGCUUGgACcGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 67259 0.67 0.998654
Target:  5'- cGAuUCGAACgUGuCUGACUUUUUGc -3'
miRNA:   3'- uCUuAGCUUGgACcGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 112762 0.67 0.998366
Target:  5'- -cAAUUGAACCUGGCa-ACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGgcUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 89397 0.67 0.998366
Target:  5'- -aAAUCaAACUUGGCUGACUUUUg-- -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 107301 0.68 0.996641
Target:  5'- aAGcGUCGGGCgaGGCCGACg------ -3'
miRNA:   3'- -UCuUAGCUUGgaCCGGCUGaaaaaca -5'
11655 3' -47.7 NC_003102.1 + 36094 0.68 0.994534
Target:  5'- ---uUCGAACCUGuCUGACUUUUUa- -3'
miRNA:   3'- ucuuAGCUUGGACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 67456 0.69 0.993631
Target:  5'- uGAuAUCuAAUCUGGCCGACUUUa--- -3'
miRNA:   3'- uCU-UAGcUUGGACCGGCUGAAAaaca -5'
11655 3' -47.7 NC_003102.1 + 54310 0.69 0.991468
Target:  5'- -aAAUC-AACUUGGCCGACUUUUc-- -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 96504 0.69 0.991468
Target:  5'- cGAuUCuAACCUGGCCGACa------ -3'
miRNA:   3'- uCUuAGcUUGGACCGGCUGaaaaaca -5'
11655 3' -47.7 NC_003102.1 + 89487 0.7 0.988761
Target:  5'- -aAAUCaAACCcGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGaCCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 10594 0.7 0.987179
Target:  5'- cGAAUCGAACgUGuCUGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112707 0.7 0.987179
Target:  5'- cGAAUCGAACgUGuCUGACUUUUcGUg -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 121675 0.7 0.987179
Target:  5'- cGAAUCGAACgUGuCUGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 89505 0.7 0.987179
Target:  5'- ---uUUGAACgUGGCUGACUUUUcGUa -3'
miRNA:   3'- ucuuAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112791 0.7 0.985431
Target:  5'- cGAAUCGAACgUGuCUGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 137197 0.71 0.979087
Target:  5'- -aAAUCGAACgUGGCCaACUUUUcgUGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGcUGAAAA--ACA- -5'
11655 3' -47.7 NC_003102.1 + 112647 0.72 0.964288
Target:  5'- cGAuUCGAACCUGuCUGACUUUUcGUg -3'
miRNA:   3'- uCUuAGCUUGGACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 133282 0.72 0.960619
Target:  5'- uGGGAcacAACCUGGCCGGCUUUUa-- -3'
miRNA:   3'- -UCUUagcUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 26501 0.72 0.952519
Target:  5'- cGAuUCGAACCUGGCUaACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGGACCGGcUGAAAAaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.