Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11656 | 3' | -48.6 | NC_003102.1 | + | 67233 | 0.66 | 0.998891 |
Target: 5'- aAAAAGUCaGaCACGUUUGAaUCGAAc -3' miRNA: 3'- cUUUUCAGcCgGUGCAAGCUaAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 61627 | 0.66 | 0.998891 |
Target: 5'- uGAAacAAGUCaGaCGCGUUCGAaUCGAAc -3' miRNA: 3'- -CUU--UUCAGcCgGUGCAAGCUaAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 61355 | 0.66 | 0.998647 |
Target: 5'- aGAAAAGUCaGaCACGUUCGAaUCa-- -3' miRNA: 3'- -CUUUUCAGcCgGUGCAAGCUaAGcuu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 114257 | 0.66 | 0.998021 |
Target: 5'- cGAGAAaucGUCgaGGCgACGUaCGAUUCGGAc -3' miRNA: 3'- -CUUUU---CAG--CCGgUGCAaGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 16884 | 0.66 | 0.997985 |
Target: 5'- ----uGUCGGCgGCGaacgagaUUUGAUUCGGAu -3' miRNA: 3'- cuuuuCAGCCGgUGC-------AAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 129919 | 0.66 | 0.997627 |
Target: 5'- ----cGUCGGCgAUGUUuacgagCGAUUCGAu -3' miRNA: 3'- cuuuuCAGCCGgUGCAA------GCUAAGCUu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 23262 | 0.67 | 0.996032 |
Target: 5'- ---cAGUCGGCCAggcCGggCGAUugcaUCGGAc -3' miRNA: 3'- cuuuUCAGCCGGU---GCaaGCUA----AGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 66383 | 0.67 | 0.995337 |
Target: 5'- -----aUCGGCCAUGUUCGAagCGu- -3' miRNA: 3'- cuuuucAGCCGGUGCAAGCUaaGCuu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 281 | 0.67 | 0.995337 |
Target: 5'- ----cGUCGGCCucGCGUUCGAgagcaUCGu- -3' miRNA: 3'- cuuuuCAGCCGG--UGCAAGCUa----AGCuu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 112809 | 0.67 | 0.995337 |
Target: 5'- cGAAAAGUCaGaCAgGUUCGAaUCGAAc -3' miRNA: 3'- -CUUUUCAGcCgGUgCAAGCUaAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 57886 | 0.67 | 0.995337 |
Target: 5'- aAAAAGcgccaCGGCCACGUUCGc--CGAGa -3' miRNA: 3'- cUUUUCa----GCCGGUGCAAGCuaaGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 112923 | 0.67 | 0.994546 |
Target: 5'- cGAAAAGUUGGCCAgGUUCa------- -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGcuaagcuu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 96343 | 0.68 | 0.99365 |
Target: 5'- aGAuuGUCGGCCAgGUUaGAaUCGAGa -3' miRNA: 3'- cUUuuCAGCCGGUgCAAgCUaAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 110667 | 0.68 | 0.99365 |
Target: 5'- ----uGUCGGCCACGUcgUUGA--CGAAa -3' miRNA: 3'- cuuuuCAGCCGGUGCA--AGCUaaGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 35473 | 0.68 | 0.990236 |
Target: 5'- -cGAAGaCGGCCGCG-UCGAUccgugCGAAg -3' miRNA: 3'- cuUUUCaGCCGGUGCaAGCUAa----GCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 54634 | 0.68 | 0.990236 |
Target: 5'- aAAAAGUCaGCCAgGUUCGAUUa--- -3' miRNA: 3'- cUUUUCAGcCGGUgCAAGCUAAgcuu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 89664 | 0.68 | 0.990236 |
Target: 5'- cGAAAAGUCaGCCACGUUCa------- -3' miRNA: 3'- -CUUUUCAGcCGGUGCAAGcuaagcuu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 36188 | 0.69 | 0.987256 |
Target: 5'- uAAAAGUCGGaCACGUUCaaaUCGAAc -3' miRNA: 3'- cUUUUCAGCCgGUGCAAGcuaAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 54617 | 0.69 | 0.987256 |
Target: 5'- uAAAAGUCGGaCACGUUCaaaUCGAAc -3' miRNA: 3'- cUUUUCAGCCgGUGCAAGcuaAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 113737 | 0.69 | 0.985525 |
Target: 5'- --uGAG-CGGCCGCcacgUCGAUUCGGu -3' miRNA: 3'- cuuUUCaGCCGGUGca--AGCUAAGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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