miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 132641 0.66 0.998662
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 132506 0.66 0.998662
Target:  5'- aACAUGUUCACGAAAAGUCca--ACu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucugUGc -5'
11657 3' -49.1 NC_003102.1 + 132410 0.66 0.998662
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 132291 0.66 0.998662
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 55812 0.66 0.998662
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5'
11657 3' -49.1 NC_003102.1 + 28301 0.66 0.998662
Target:  5'- uGAUACGUCUGCGGAucGUgGuGCACc -3'
miRNA:   3'- -CUGUGCAGGUGCUUuuCAgUcUGUGc -5'
11657 3' -49.1 NC_003102.1 + 86158 0.66 0.998382
Target:  5'- aAguCGUCCACGAGcgugauGGUCuuGACGCa -3'
miRNA:   3'- cUguGCAGGUGCUUu-----UCAGu-CUGUGc -5'
11657 3' -49.1 NC_003102.1 + 86081 0.66 0.998053
Target:  5'- gGACAUGauggCGCGAAc-GUCGGGCACGc -3'
miRNA:   3'- -CUGUGCag--GUGCUUuuCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 70810 0.66 0.998018
Target:  5'- cGACuACGUaCACGAucGAGGUCuuauacgGGGCGCGa -3'
miRNA:   3'- -CUG-UGCAgGUGCU--UUUCAG-------UCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 89481 0.66 0.997671
Target:  5'- -------aCACGAAAAGUCAGACAgGu -3'
miRNA:   3'- cugugcagGUGCUUUUCAGUCUGUgC- -5'
11657 3' -49.1 NC_003102.1 + 54254 0.66 0.997671
Target:  5'- cGACACGacccUCCguugcggaauacAUGAuugaaaugcaAAAGUCGGACACGu -3'
miRNA:   3'- -CUGUGC----AGG------------UGCU----------UUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112733 0.66 0.997671
Target:  5'- aACAUGUUUAUGAAAAGUCAuACAa- -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcUGUgc -5'
11657 3' -49.1 NC_003102.1 + 72148 0.66 0.997671
Target:  5'- cGAuCGCGUCCGCGAucauguacuGAAG-CGcGACGCu -3'
miRNA:   3'- -CU-GUGCAGGUGCU---------UUUCaGU-CUGUGc -5'
11657 3' -49.1 NC_003102.1 + 59279 0.66 0.997671
Target:  5'- uGACACGUU--CGAA---UCGGACACGa -3'
miRNA:   3'- -CUGUGCAGguGCUUuucAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 107712 0.67 0.997228
Target:  5'- aGACACGaUCCAUGAuGAuUCGuACACGa -3'
miRNA:   3'- -CUGUGC-AGGUGCUuUUcAGUcUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26533 0.67 0.997228
Target:  5'- --uGCGUCaucuuucuCGAAAAGUCGGcCACGu -3'
miRNA:   3'- cugUGCAGgu------GCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26973 0.67 0.997228
Target:  5'- aACAUGUUCAUGAAAAGUCca--ACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5'
11657 3' -49.1 NC_003102.1 + 100635 0.67 0.997082
Target:  5'- aGCGCGUUCACGcc-GGUCAgaaucaaaaaacucGACGCGc -3'
miRNA:   3'- cUGUGCAGGUGCuuuUCAGU--------------CUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 31252 0.67 0.996131
Target:  5'- cGGCGuCaUCUACGAGagcgucGAGUUGGACACGa -3'
miRNA:   3'- -CUGU-GcAGGUGCUU------UUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 10914 0.67 0.995462
Target:  5'- aACAUGUUCACaAAAAGUCAuACAUGu -3'
miRNA:   3'- cUGUGCAGGUGcUUUUCAGUcUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.