Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11657 | 3' | -49.1 | NC_003102.1 | + | 55812 | 0.66 | 0.998662 |
Target: 5'- aACAUGUUCAUGAAAAGUCuaACAa- -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 55955 | 0.68 | 0.989216 |
Target: 5'- aACAUGUUaGCGAAAcGUCAGACAa- -3' miRNA: 3'- cUGUGCAGgUGCUUUuCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137328 | 0.69 | 0.986062 |
Target: 5'- -cUACGgCUAUGAAAAGUCGGcCGCGu -3' miRNA: 3'- cuGUGCaGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26746 | 1.1 | 0.012129 |
Target: 5'- cGACACGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132641 | 0.66 | 0.998662 |
Target: 5'- aACAUGUUCAUGAAAAGUCuaACAa- -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 86081 | 0.66 | 0.998053 |
Target: 5'- gGACAUGauggCGCGAAc-GUCGGGCACGc -3' miRNA: 3'- -CUGUGCag--GUGCUUuuCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 59279 | 0.66 | 0.997671 |
Target: 5'- uGACACGUU--CGAA---UCGGACACGa -3' miRNA: 3'- -CUGUGCAGguGCUUuucAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26533 | 0.67 | 0.997228 |
Target: 5'- --uGCGUCaucuuucuCGAAAAGUCGGcCACGu -3' miRNA: 3'- cugUGCAGgu------GCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 31252 | 0.67 | 0.996131 |
Target: 5'- cGGCGuCaUCUACGAGagcgucGAGUUGGACACGa -3' miRNA: 3'- -CUGU-GcAGGUGCUU------UUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97702 | 0.68 | 0.992871 |
Target: 5'- cGGCACgGUCCACGAucuAGUUugcauGGugACa -3' miRNA: 3'- -CUGUG-CAGGUGCUuu-UCAG-----UCugUGc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 46847 | 0.67 | 0.995462 |
Target: 5'- gGACACGUCgCGucCGGAAGGcaaaAGACGCa -3' miRNA: 3'- -CUGUGCAG-GU--GCUUUUCag--UCUGUGc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 100635 | 0.67 | 0.997082 |
Target: 5'- aGCGCGUUCACGcc-GGUCAgaaucaaaaaacucGACGCGc -3' miRNA: 3'- cUGUGCAGGUGCuuuUCAGU--------------CUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132291 | 0.66 | 0.998662 |
Target: 5'- aACAUGUUCAUGAAAAGUCuaACAa- -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 54729 | 0.67 | 0.994701 |
Target: 5'- aGAuCAUGUUCAUGAAAAGUCAuACAa- -3' miRNA: 3'- -CU-GUGCAGGUGCUUUUCAGUcUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132410 | 0.66 | 0.998662 |
Target: 5'- aACAUGUUCAUGAAAAGUCuaACAa- -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26973 | 0.67 | 0.997228 |
Target: 5'- aACAUGUUCAUGAAAAGUCca--ACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 54822 | 0.68 | 0.992871 |
Target: 5'- aACAUGUUCACuAAAAGUUGGACAa- -3' miRNA: 3'- cUGUGCAGGUGcUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132837 | 0.69 | 0.987717 |
Target: 5'- aACAUGUUCACGAAAAGUauaaCAGGuuCAUGa -3' miRNA: 3'- cUGUGCAGGUGCUUUUCA----GUCU--GUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132506 | 0.66 | 0.998662 |
Target: 5'- aACAUGUUCACGAAAAGUCca--ACu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucugUGc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 70810 | 0.66 | 0.998018 |
Target: 5'- cGACuACGUaCACGAucGAGGUCuuauacgGGGCGCGa -3' miRNA: 3'- -CUG-UGCAgGUGCU--UUUCAG-------UCUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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