Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11657 | 3' | -49.1 | NC_003102.1 | + | 132259 | 0.69 | 0.980067 |
Target: 5'- aACAUGUUCACGAAAAGUCuaACAa- -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 55488 | 0.69 | 0.980067 |
Target: 5'- aACAUGUUCACGAAAAGUCcaACAa- -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 54822 | 0.68 | 0.992871 |
Target: 5'- aACAUGUUCACuAAAAGUUGGACAa- -3' miRNA: 3'- cUGUGCAGGUGcUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26533 | 0.67 | 0.997228 |
Target: 5'- --uGCGUCaucuuucuCGAAAAGUCGGcCACGu -3' miRNA: 3'- cugUGCAGgu------GCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 54893 | 0.72 | 0.941658 |
Target: 5'- aACAUGUUCACGAAAAGUCua--ACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 55137 | 0.71 | 0.962642 |
Target: 5'- aACAUGUUCAUGAAAAGUCuaACAUGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137328 | 0.69 | 0.986062 |
Target: 5'- -cUACGgCUAUGAAAAGUCGGcCGCGu -3' miRNA: 3'- cuGUGCaGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 59279 | 0.66 | 0.997671 |
Target: 5'- uGACACGUU--CGAA---UCGGACACGa -3' miRNA: 3'- -CUGUGCAGguGCUUuucAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 89677 | 0.7 | 0.969332 |
Target: 5'- -cCACcagauUCUACGAAAAGUCAGcCACGu -3' miRNA: 3'- cuGUGc----AGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 70810 | 0.66 | 0.998018 |
Target: 5'- cGACuACGUaCACGAucGAGGUCuuauacgGGGCGCGa -3' miRNA: 3'- -CUG-UGCAgGUGCU--UUUCAG-------UCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137404 | 0.69 | 0.986062 |
Target: 5'- -cUACGgCUAUGAAAAGUCGGcCGCGu -3' miRNA: 3'- cuGUGCaGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 20787 | 0.7 | 0.977695 |
Target: 5'- cGACuACGaCgACGAcGAGUUGGACGCGa -3' miRNA: 3'- -CUG-UGCaGgUGCUuUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132837 | 0.69 | 0.987717 |
Target: 5'- aACAUGUUCACGAAAAGUauaaCAGGuuCAUGa -3' miRNA: 3'- cUGUGCAGGUGCUUUUCA----GUCU--GUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97702 | 0.68 | 0.992871 |
Target: 5'- cGGCACgGUCCACGAucuAGUUugcauGGugACa -3' miRNA: 3'- -CUGUG-CAGGUGCUuu-UCAG-----UCugUGc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 10914 | 0.67 | 0.995462 |
Target: 5'- aACAUGUUCACaAAAAGUCAuACAUGu -3' miRNA: 3'- cUGUGCAGGUGcUUUUCAGUcUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26973 | 0.67 | 0.997228 |
Target: 5'- aACAUGUUCAUGAAAAGUCca--ACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 74815 | 0.74 | 0.880332 |
Target: 5'- uGAC-CGUCCACGAAgcGccugacgaUCGGGCACGu -3' miRNA: 3'- -CUGuGCAGGUGCUUuuC--------AGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132733 | 0.72 | 0.941658 |
Target: 5'- aACAUGUUCACGAAAAGUCua--ACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26002 | 0.71 | 0.954999 |
Target: 5'- aACcUGUUUACGAAAAGUCGGcCACGu -3' miRNA: 3'- cUGuGCAGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 132869 | 0.71 | 0.962642 |
Target: 5'- aACAUGUUCACGAAAAGUCuaACAgGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucUGUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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