miRNA display CGI


Results 41 - 60 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 54628 0.76 0.795311
Target:  5'- aACAUGUuuGCuAAAAGUCGGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 110373 0.74 0.880332
Target:  5'- gGGCGCGUCCACGAucauGUC-GACgGCGu -3'
miRNA:   3'- -CUGUGCAGGUGCUuuu-CAGuCUG-UGC- -5'
11657 3' -49.1 NC_003102.1 + 55137 0.71 0.962642
Target:  5'- aACAUGUUCAUGAAAAGUCuaACAUGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 27057 0.75 0.813902
Target:  5'- aACAUGUUCACGAAAAGUCA--UACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 89677 0.7 0.969332
Target:  5'- -cCACcagauUCUACGAAAAGUCAGcCACGu -3'
miRNA:   3'- cuGUGc----AGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 10766 0.81 0.545293
Target:  5'- aACcCGaCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 132949 0.71 0.962642
Target:  5'- aACAUGUUCACGAAAAGUCuaACAgGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUgC- -5'
11657 3' -49.1 NC_003102.1 + 97987 0.79 0.651732
Target:  5'- aACcCGUCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 97930 0.79 0.651732
Target:  5'- aACcCGUCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 121927 0.78 0.694318
Target:  5'- aACGCGUUUAUGAAAAGUCAaACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 121847 0.77 0.725693
Target:  5'- aACcUGaCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 67342 0.77 0.725693
Target:  5'- aACAUGUuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 67244 0.77 0.725693
Target:  5'- aACAUGUuuGCaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 97873 0.75 0.82293
Target:  5'- aACcUGUCUAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 103651 0.75 0.840407
Target:  5'- gGACACGUUugagCACGAAAAGUCGGcCAgGu -3'
miRNA:   3'- -CUGUGCAG----GUGCUUUUCAGUCuGUgC- -5'
11657 3' -49.1 NC_003102.1 + 133013 0.74 0.857053
Target:  5'- aACAUGUUCACGAAAAGUCuaACAUGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 10848 0.74 0.865045
Target:  5'- aACA-GUUCAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGUgCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 74815 0.74 0.880332
Target:  5'- uGAC-CGUCCACGAAgcGccugacgaUCGGGCACGu -3'
miRNA:   3'- -CUGuGCAGGUGCUUuuC--------AGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26141 0.72 0.931473
Target:  5'- aACcCGaCUACGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 26928 0.71 0.954999
Target:  5'- aACAUGUUUACGAAAAGUCA--UACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcuGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.