Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11660 | 5' | -62 | NC_003102.1 | + | 14950 | 0.66 | 0.641416 |
Target: 5'- cCGCUGCCGCCGCuCGAagacuuGGuuUCGu- -3' miRNA: 3'- aGCGGCGGCGGCG-GCUgu----CCu-AGCua -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 1733 | 0.66 | 0.641416 |
Target: 5'- uUCGaUCGgUGgCuCCGGCAGGAUCGAUg -3' miRNA: 3'- -AGC-GGCgGCgGcGGCUGUCCUAGCUA- -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 38756 | 0.66 | 0.638448 |
Target: 5'- gUCGUCGUCGCCGCCGcuuuugaccacaucACAGcc-CGAUu -3' miRNA: 3'- -AGCGGCGGCGGCGGC--------------UGUCcuaGCUA- -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 46016 | 0.66 | 0.631521 |
Target: 5'- cCGCCGCCGCCGCUGcCucuucuAUCGc- -3' miRNA: 3'- aGCGGCGGCGGCGGCuGucc---UAGCua -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 71904 | 0.66 | 0.621626 |
Target: 5'- -gGUCGCCGUCGgCGACAaGGAcagCGGc -3' miRNA: 3'- agCGGCGGCGGCgGCUGU-CCUa--GCUa -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 91191 | 0.66 | 0.621626 |
Target: 5'- aCGCgGCCGCCGCU--CAGaaucgucucGAUCGAg -3' miRNA: 3'- aGCGgCGGCGGCGGcuGUC---------CUAGCUa -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 119316 | 0.66 | 0.611738 |
Target: 5'- gUCuCCGuuGCCGUCGACAGcGAuguaUUGAUu -3' miRNA: 3'- -AGcGGCggCGGCGGCUGUC-CU----AGCUA- -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 51590 | 0.66 | 0.611738 |
Target: 5'- uUUGUCGCCGCCGuuGuCGG--UCGAa -3' miRNA: 3'- -AGCGGCGGCGGCggCuGUCcuAGCUa -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 31625 | 0.66 | 0.601865 |
Target: 5'- -aGCUGCUGUCugGCCGGCGGGuaCGAUa -3' miRNA: 3'- agCGGCGGCGG--CGGCUGUCCuaGCUA- -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 129123 | 0.67 | 0.582188 |
Target: 5'- -aGCgGCaGCUGCCGGCGGGGUagCGGc -3' miRNA: 3'- agCGgCGgCGGCGGCUGUCCUA--GCUa -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 111425 | 0.67 | 0.582188 |
Target: 5'- aCGCCGCCGCCGCCGcCu-------- -3' miRNA: 3'- aGCGGCGGCGGCGGCuGuccuagcua -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 41323 | 0.67 | 0.562645 |
Target: 5'- cUCGCCGCCGCUaaugGCCGucgucaAUAGGuacgugCGAUu -3' miRNA: 3'- -AGCGGCGGCGG----CGGC------UGUCCua----GCUA- -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 92974 | 0.67 | 0.562645 |
Target: 5'- aCGCCGCCGCCGauaccgucuUUGACGcGGuUUGAUg -3' miRNA: 3'- aGCGGCGGCGGC---------GGCUGU-CCuAGCUA- -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 128953 | 0.67 | 0.562645 |
Target: 5'- cCGCCGCCGCuacccCGCCGGCAGc------ -3' miRNA: 3'- aGCGGCGGCG-----GCGGCUGUCcuagcua -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 6712 | 0.67 | 0.552939 |
Target: 5'- gUGCCGCUGCCGCCGGuguuGGcgCu-- -3' miRNA: 3'- aGCGGCGGCGGCGGCUgu--CCuaGcua -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 1665 | 0.67 | 0.533683 |
Target: 5'- -gGCgGCgGCgguaaaauuugUGUCGGCAGGAUCGAUg -3' miRNA: 3'- agCGgCGgCG-----------GCGGCUGUCCUAGCUA- -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 19561 | 0.67 | 0.530815 |
Target: 5'- cUCGCCGCCGaCGCCGAuguCAuuacguaccgaaacGcGAUCGAUc -3' miRNA: 3'- -AGCGGCGGCgGCGGCU---GU--------------C-CUAGCUA- -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 95881 | 0.68 | 0.524144 |
Target: 5'- aCGgUGCCGCCGCCGaACAGauGGUUGu- -3' miRNA: 3'- aGCgGCGGCGGCGGC-UGUC--CUAGCua -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 134947 | 0.68 | 0.505269 |
Target: 5'- cCGUCGCCGCucaacacgccgaCGCCGGCGGGcagcaCGAc -3' miRNA: 3'- aGCGGCGGCG------------GCGGCUGUCCua---GCUa -5' |
|||||||
11660 | 5' | -62 | NC_003102.1 | + | 59350 | 0.68 | 0.477525 |
Target: 5'- gUUGCCGCCGUCGCCGuCGccgcUCGAa -3' miRNA: 3'- -AGCGGCGGCGGCGGCuGUccu-AGCUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home